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Figure 4 | Phylogenetic Tree Based off of Genome

by Lofts, Brandon, Ramirez, Elizabeth, Tang, Xiaolu, vasquez, delbert
Published 2022

Figure 4 | Phylogenetic Tree Based off of Genome

by Lofts, Brandon, Ramirez, Elizabeth, Tang, Xiaolu, vasquez, delbert
Published 2022

Figure 2 | Phylogenetic Tree based on Toll-like Receptor 5 (TLR5) CDS

by Lofts, Brandon, Ramirez, Elizabeth, Tang, Xiaolu, vasquez, delbert
Published 2022

Figure 2 | Phylogenetic Tree based on Toll-like Receptor 5 (TLR5) CDS

by Lofts, Brandon, Ramirez, Elizabeth, Tang, Xiaolu, vasquez, delbert
Published 2022

Genetic Variability and Structuring of Arctic Charr (Salvelinus alpinus) Populations in Northern Fennoscandia

by Shikano, Takahito, Järvinen, Antero, Marjamaki, Paula, Kahilainen, Kimmo K., Merilä, Juha
Published in PLOS ONE (2016)

MassIVE MSV000087017 - Fish species identification in mixed samples using DNA sequencing and a proteomics-based approaches : With globally rising demands for food and increasing pressure on over-exploited food chains, feed and food adulteration has become an emerging problem, threatening both food security and food safety. In this context, development of sensitive molecular tools for food and feed authentication are key; on the one hand to ensure correct labelling of products to remedy safety concerns, on the other hand to tackle fraud such as the replacement of expensive food fish species with cheaper ones or with species that are endangered or unfit for human consumption. DNA metabarcoding approaches for distinguishing fish species in pure samples already are available; however, detection and quantification of fish species in highly processed and mixed products is still a challenge. In the present study, we use high throughput DNA sequencing and shot-gun proteomics to detect and differentiate seven fish species (Melanogrammus aeglefinus, Oreochromis niloticu, Gadus morhua, Salmo salar, Esox Lucius, Pangasianodon hypophthalmus, Xiphophorus maculatus), and to quantify the content of a mixture of three fish species. The results demonstrate that shotgun DNA sequencing in combination with mapping against masked reference genomes can be a useful tool for the identification of fish species and the relative amounts of each species in a mixed sample. Shotgun proteomics based on direct spectral comparison of tandem mass spectra allowed for the construction of phylogenetic trees which separated the seven fish samples accurately...

by Rasinger, Josef Daniel
Published 2021

Data from: A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

by Macqueen, Daniel J., Johnston, Ian A.
Published 2014

Data files for salmonid nuclear gene paralogs

by Macqueen, Daniel J., Johnston, Ian A.
Published 2014

Data files for salmonid nuclear gene paralogs

by Macqueen, Daniel J., Johnston, Ian A.
Published 2014

Dietary citric acid supplementation alleviates soybean meal-induced intestinal oxidative damage and micro-ecological imbalance in juvenile turbot, Scophthalmus maximus L

by Chen, Zhichu, Zhao, Sifan, Liu, Yang, Yang, Pei, Ai, Qinghui, Zhang, Wenbing, Xu, Weiqi, Zhang, Yongan, Zhang, Yanjiao, Mai, Kangsen
Published in Aquaculture Research (2018)

Dietary citric acid supplementation alleviates soybean meal-induced intestinal oxidative damage and micro-ecological imbalance in juvenile turbot, Scophthalmus maximus L

by Chen, Zhichu, Zhao, Sifan, Liu, Yang, Yang, Pei, Ai, Qinghui, Zhang, Wenbing, Xu, Weiqi, Zhang, Yongan, Zhang, Yanjiao, Mai, Kangsen
Published in Aquaculture Research (2018)

Cloning and expression analysis of the NFκB inhibitor IκBα of ayu ( Plecoglossus altivelis )

by ZHANG, Wen-Qing, GONG, Yi-Fu, ZHANG, Li, LI, Jun, LIU, Xiao-Dan
Published 2013

Cloning and expression analysis of the NFκB inhibitor IκBα of ayu ( Plecoglossus altivelis )

by ZHANG, Wen-Qing, GONG, Yi-Fu, ZHANG, Li, LI, Jun, LIU, Xiao-Dan
Published 2013

Dietary stachyose altered the intestinal microbiota profile and improved the intestinal mucosal barrier function of juvenile turbot, Scophthalmus maximus L.

by Yang, Pei, Hu, Haibin, Liu, Yang, Li, Yanxian, Ai, Qinghui, Xu, Wei, Zhang, Wenbing, Zhang, Yongan, Zhang, Yanjiao, Mai, Kangsen
Published in Aquaculture (2018)

Cloning, functional characterization and expression analysis of nuclear factor erythroid-2-related factor-2 of golden pompano (Trachinotus ovatus) and its response to air-exposure

by Jiajun Xie, Xu Chen, Jin Niu
Published in Aquaculture Reports (2021)

Dietary stachyose altered the intestinal microbiota profile and improved the intestinal mucosal barrier function of juvenile turbot, Scophthalmus maximus L.

by Yang, Pei, Hu, Haibin, Liu, Yang, Li, Yanxian, Ai, Qinghui, Xu, Wei, Zhang, Wenbing, Zhang, Yongan, Zhang, Yanjiao, Mai, Kangsen
Published in Aquaculture (2018)

Molecular Characterization of E-Type Prostanoid Receptor 4 (EP4) from Ayu (Plecoglossus altivelis) and Its Functional Analysis in the Monocytes/Macrophages

by Rong, Ye-Jing, Lu, Xin-Jiang, Chen, Jiong
Published in PLOS ONE (2016)

Molecular Characterization of E-Type Prostanoid Receptor 4 (EP4) from Ayu (Plecoglossus altivelis) and Its Functional Analysis in the Monocytes/Macrophages.

by Ye-Jing Rong, Xin-Jiang Lu, Jiong Chen
Published in PLOS ONE (2016)

Putative ergothioneine transporter of salmonids as a functional tool for ergothioneine supplementation

by Kitsanayanyong Lalitphan, Ishikawa Yuki, Ohshima Toshiaki
Published in Aquaculture (2022)

Investigation of Anisakis larvae in different products of ready-to-eat fish meat and imported frozen fish in Turkey

by Şimşek, Emrah, Pekmezci, Gökmen Zafer, Yıldırım, Alparslan, Düzlü, Önder, Önder, Zuhal, Çiloǧlu, Arif, Sürsal, Neslihan, Yılmaz, Erdal, Gönülalan, Zafer, İnci, Abdullah
Published in International Journal of Food Microbiology (2020)