Data files for salmonid nuclear gene paralogs

This zip file contains 18 nucleotide sequence alignment files in fasta format that were combined in the BEAST analyses that led to the dating of the salmonid whole genome duplication (WGD) event and in a range of other phylogenetic analyses described in the paper (see Figure 2, and Figure S20 and Fi...

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Bibliographic Details
Main Authors: Macqueen, Daniel J., Johnston, Ian A.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2014
Subjects:
Whole Genome Duplication
Species Diversification
Salmonid Fish
Climate change
Evolution
Cretaceous
Cenozoic
Salmonidae
Salmoninae
Thymallinae
Coregoninae
Salmo salar
Online Access:https://dx.doi.org/10.5061/dryad.2m3v4/2
http://datadryad.org/resource/doi:10.5061/dryad.2m3v4/2
Description
Summary:This zip file contains 18 nucleotide sequence alignment files in fasta format that were combined in the BEAST analyses that led to the dating of the salmonid whole genome duplication (WGD) event and in a range of other phylogenetic analyses described in the paper (see Figure 2, and Figure S20 and Figure S27 in the electronic supplementary material). Each alignment is in frame, so can be translated into coded protein data easily. These files have names that can be attached to individual phylogenetic tree data provided in the electronic supplementary material of the paper (Figures S1-S18). Note: the nomenclature for species is identical across alignments as follows: Osmerus = Osmerus mordax; Esox = Esox Lucius; Ss1 = Salmo salar WGD paralog 1; Ss2 = S. salar WGD paralog 2; Om1 = Oncorhynchus mykiss WGD paralog 1; Om2 = O. mykiss WGD paralog 2; Cl1 = Coregonus lavaretus WGD paralog 1; Cl2 = C. lavaretus WGD paralog 2; Tt1 = Thymallus thymallus WGD paralog 1; Tt2 = T. thymallus WGD paralog 2.

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