Fig. 5. A in Differential expression after UV-B radiation and characterization of chalcone synthase from the Patagonian hairgrass Deschampsia antarctica

Fig. 5. A) Structural alignment between DaCHS (red) and crystal 4YJY (cyan). The RMSD value was 0.25 Å. B) Molecular dynamics simulation analysis. The MDS was carried out using NAMD software and the trajectory analysis was carried out by using VMD software. C) Proteins' structural stability in...

Full description

Bibliographic Details
Main Authors: Cuadra, Pedro, Guajardo, Joselin, Carrasco-Orellana, Cristian, Stappung, Yazmina, Fajardo, Víctor, Herrera, Raúl
Format: Still Image
Language:unknown
Published: 2020
Subjects:
Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Deschampsia
Raúl
Carrasco
Antarc*
Antarctica
Online Access:https://zenodo.org/record/8293727
https://doi.org/10.5281/zenodo.8293727
Description
Summary:Fig. 5. A) Structural alignment between DaCHS (red) and crystal 4YJY (cyan). The RMSD value was 0.25 Å. B) Molecular dynamics simulation analysis. The MDS was carried out using NAMD software and the trajectory analysis was carried out by using VMD software. C) Proteins' structural stability in the function of RMSD, during 2 ns of MDS. RMSF plots of DaCHS (red) and 4YJY chain A (blue) during MD simulation are compared. The greatest fluctuations are found in the loops region of proteins. Published as part of Cuadra, Pedro, Guajardo, Joselin, Carrasco-Orellana, Cristian, Stappung, Yazmina, Fajardo, Víctor & Herrera, Raúl, 2020, Differential expression after UV-B radiation and characterization of chalcone synthase from the Patagonian hairgrass Deschampsia antarctica, pp. 1-10 in Phytochemistry (112179) 169 on page 5, DOI:10.1016/j.phytochem.2019.112179, http://zenodo.org/record/8293717

Similar Items