EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics bring...

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Bibliographic Details
Published in:Nucleic Acids Research
Main Authors: Hunter, Sarah, Corbett, Matthew, Hubert, Denise, Fraser, Matthew, Gonzalez-Beltran, Alejandra, Hunter, Christopher, Jones Philip, Leinonen, Rasko, McAnulla, Craig, Maguire, Eamonn, Maslen, John, Michell, Alex, Gift, Nuka, Oisel, Arnaud, Pesseat, Sebastien, Radhakrishnan, Rajesh, Rocca-Serra, Philippe, Scheremetjew, Maxim, Sterk, Peter, Vaughan, Daniel, Cochrane, Guy, Field, Dawn, Sansone, Susanna-Assunta
Format: Article in Journal/Newspaper
Language:unknown
Published: 2013
Subjects:
Tundra
Online Access:https://zenodo.org/record/7524
https://doi.org/10.1093/nar/gkt961
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Summary:Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive.

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