| Summary: | This release primarily brings the addition of using the Python Sphinx tool for building and working with documentation. The intent is that the Sphinx-built documentation will be publishable on the web. The other large change is the improvement of metadata storage and handling in the parameter files and utilities for converting the parameter files back and forth between fixed width text and command separated values. Additionally there were updates to a few outputs, and the addition of a new variable (ecosystem respiration) to the calibration tools. Added Parameter utility functions for converting between Fixed Width Text (fwt) and Comma Separated Value (csv) parameter files. Notation for recording metadata in fixed width text parameter files. Documentation system using Sphinx with outline and some of the content written. Respiration_ecosystem (or RE or ER, depending on context) added to the calibration json files and calibration plotter. NEE (Net Ecosystem Exchange) added to the calibration json. Internal holding for LAYERTYPE, LAYERDEPTH, and LAYERDZ (efficiency gain as this reduces the overall number of file writes). Add unit specification for the following: LAYERDEPTH, LAYERDZ, MOSSDEATHC, MOSSDEATHN Fixed Outputs that only exist by layer default to always be output by layer: PERCOLATION, ROOTWATERUPTAKE, HKLAYER, IWCLAYER, LAYERDEPTH, LAYERDZ, LAYERTYPE,LWCLAYER, QDRAINLAYER, TCLAYER, TLAYER, VWCLAYER Port numbers and specification for docker containers, specifically -dev container. This allows things such as jupyter notebooks to be accessed from outside the container. Missing Graphviz dependency. Changed Organization of Doxygen project to better work with Sphinx. Standardize unit specification for unitless variables to use empty string the following: FRONTSTYPE Example notebooks and scripts to refer to the newer layout and naming of Docker images/containers.
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