Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data

This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: NBW_SNPS_f...

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Bibliographic Details
Main Authors: de Greef, Evelien, Einfeldt, Anthony, Miller, Patrick, Ferguson, Steve, Garroway, Colin, Lefort, Kyle, Paterson, Ian, Bentzen, Paul, Feyrer, Laura
Format: Dataset
Language:unknown
Published: 2021
Subjects:
hyperoodon ampullatus
Northern bottlenose whale
Online Access:https://zenodo.org/record/5772727
https://doi.org/10.5281/zenodo.5772727
Description
Summary:This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: NBW_SNPS_filtered_demography_analyses.vcf.gz - Filtered SNPs for demography analyses. Filtered for quality (removed qual < 20, mq < 30, qd < 2, missingness > 0.4), non-biallelic sites, autosomes, structural variants, minimum scaffold length 100kb. NBW_SNPS_filtered_imputed_haplotype_analyses.vcf.gz - Filtered and imputed SNPs for haplotype analyses. Filtered for quality, non-biallelic sites, autosomes, structural variants, max-missingness 0.1, minor allele count 2, minimum scaffold length 50kb. We recommend using "Evaluating population structure in the northern bottlenose whale, Hyperoodon ampullatus, using genomic resequencing data" (10.5281/zenodo.5719248), as these data were consolidated after revisions.

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