Data from: Nitrogen deposition alters plant–fungal relationships: linking belowground dynamics to aboveground vegetation change

• Main Authors: Dean, Sarah L., Farrer, Emily C., Taylor, D. Lee, Porras-Alfaro, Andrea, Suding, Katharine N., Sinsabaugh, Robert L.
• Format: Dataset
• Language: unknown
• Published: 2013
• Subjects: Deschampsia cespitosa; root fungi; nitrogen deposition; Geum rossii; 454 pyrosequencing; ITS; Helotiales; Bray; Tundra
• Online Access: https://zenodo.org/record/4942355; https://doi.org/10.5061/dryad.sv33f

Nitrogen (N) deposition rates are increasing globally due to anthropogenic activities. Plant community responses to N are often attributed to altered competitive interactions between plants, but may also be a result of microbial responses to N, particularly root-associated fungi (RAF), which are known to affect plant fitness. In response to N, Deschampsia cespitosa, a codominant plant in the alpine tundra at Niwot Ridge (CO), increases in abundance, while Geum rossii, its principal competitor, declines. Importantly, G. rossii declines with N even in the absence of its competitor. We examined whether contrasting host responses to N are associated with altered plant–fungal symbioses, and whether the effects of N are distinct from effects of altered plant competition on RAF, using 454 pyrosequencing. Host RAF communities were distinct (only 9.4% of OTUs overlapped). N increased RAF diversity in G. rossii, but decreased it in D. cespitosa. D. cespitosa RAF communities were more responsive to N than G. rossii RAF communities, perhaps indicating a flexible microbial community aids host adaptation to nutrient enrichment. Effects of removing D. cespitosa were distinct from effects of N on G. rossii RAF, and D. cespitosa presence reversed RAF diversity response to N. The most dominant G. rossii RAF order, Helotiales, was the most affected by N, declining from 83% to 60% of sequences, perhaps indicating a loss of mutualists under N enrichment. These results highlight the potential importance of belowground microbial dynamics in plant responses to N deposition. alpha diversity codeR code that tests for relationships between alpha diversity measures and treatment. Inputs are collated alpha diversity files produced in QIIME.alpha.RNiwotDGF mapEnvironmental mapping file, providing treatment, plot, DNA dilution, and sequencing run information for each sample.NiwotDGF_map3.csvNMDS codeR code to build NMDS plot of bray-curtis distance matrix describing distances between communities from each sample. Also a permutation test for ...