Figure 5 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865

Figure 5 Maximum likelihood tree of the D-loop haplotypes found in cave and surface specimens. Most similar sequences obtained in GenBank through BLAST analyses are included in the tree. In agreement with the 16S rRNA data, two distinct lineages were identified; one that includes C. bairdii specimen...

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Bibliographic Details
Main Authors: Espinasa, Luis, Smith, Drake M., Lindquist, Julianna M.
Format: Other/Unknown Material
Language:unknown
Published: 2021
Subjects:
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Cottidae
Cottus
Cottus bairdii
Cottus cognatus
Cave
hybrid
Speciation
stygobite
troglobite
Grotto
Online Access:https://zenodo.org/record/4703496
https://doi.org/10.3897/subtbiol.38.60865.figure5
Description
Summary:Figure 5 Maximum likelihood tree of the D-loop haplotypes found in cave and surface specimens. Most similar sequences obtained in GenBank through BLAST analyses are included in the tree. In agreement with the 16S rRNA data, two distinct lineages were identified; one that includes C. bairdii specimens and one that includes C. cognatus. Cave haplotypes within the C. bairdii clade are identified by numerals (1–8) and Cave and Antes Creek haplotypes within the C. cognatus clade are identified by letters (A–L). Notice that cave individuals are found within both lineages.

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