A Bayesian semi-parametric GLMM for historical and newly collected presence-only data: an application to species richness of Ross Sea Mollusca

Historical datasets from vast and relatively inaccessible areas are sources of potentially unique information still valuable for biodiversity studies today. In many research elds, ranging from climate change to projection of species loss, great efforts have been made to integrate historical datasets...

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Bibliographic Details
Published in:Environmetrics
Main Authors: CAROTA, Cinzia, Nava, C. R., Ghiglione, C., Schiaparelli, S.
Other Authors: Carota, Cinzia
Format: Article in Journal/Newspaper
Language:English
Published: 2017
Subjects:
Bayesian hierarchical GLMM
Dirichlet process random effects
Opportunistic sampling schemes
Presence-only data
Ross Sea Mollusca
Species richness.
Ross Sea
Southern Ocean
Online Access:http://hdl.handle.net/2318/1651296
https://doi.org/10.1002/env.2462
Description
Summary:Historical datasets from vast and relatively inaccessible areas are sources of potentially unique information still valuable for biodiversity studies today. In many research elds, ranging from climate change to projection of species loss, great efforts have been made to integrate historical datasets with recent data to create databases that are as complete as possible. Unlocking the information contained in presence-only data, largely prevalent in such databases, presents a challenge for statistical modeling because of insidious observational errors due to the opportunistic nature of the data gathering process. In this article we propose an appropriate statistical method for the joint analysis of historical and newly collected presence-only data, i.e. a Bayesian semi-parametric generalized linear mixed model (GLMM) with Dirichlet process random effects. The potential of the method is illustrated by considering the Ross Sea section of the SOMBASE, an international compilation of Southern Ocean Mollusc distributional records, from 1899 to 2004 and beyond. Despite the presence of sampling bias and non-detection errors, the proposed model draws latent information from the data such that the resulting estimates of the parameters of interest are not only coherent with those obtained in indirectly related studies based on well structured data, but also suggest interesting ideas for further research.

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