Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response
Parasitic sea lice (e.g., Lepeophtheirus salmonis) cause costly outbreaks in salmon farming. Molecular insights into parasite-induced host responses will provide the basis for improved management strategies. We investigated the early transcriptomic responses in pelvic fins of Atlantic salmon parasit...
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Molecular Diversity Preservation International
2020
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Online Access: | https://eprints.utas.edu.au/35010/ https://eprints.utas.edu.au/35010/1/140961%20-%20Transcriptomic%20profiling%20in%20fins%20of%20Atlantic%20salmon%20parasitized%20with%20sea%20lice.pdf |
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ftunivtasmania:oai:eprints.utas.edu.au:35010 2023-05-15T15:30:33+02:00 Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response Umasuthan, N Xue, X Caballero-Solares, A Kumar, S Westcott, JD Chen, Z Fast, MD Skugor, S Nowak, BF Taylor, RG Rise, ML 2020 application/pdf https://eprints.utas.edu.au/35010/ https://eprints.utas.edu.au/35010/1/140961%20-%20Transcriptomic%20profiling%20in%20fins%20of%20Atlantic%20salmon%20parasitized%20with%20sea%20lice.pdf en eng Molecular Diversity Preservation International https://eprints.utas.edu.au/35010/1/140961%20-%20Transcriptomic%20profiling%20in%20fins%20of%20Atlantic%20salmon%20parasitized%20with%20sea%20lice.pdf Umasuthan, N, Xue, X, Caballero-Solares, A, Kumar, S, Westcott, JD, Chen, Z, Fast, MD, Skugor, S, Nowak, BF orcid:0000-0002-0347-643X , Taylor, RG and Rise, ML 2020 , 'Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response' , International Journal of Molecular Sciences, vol. 21, no. 7 , pp. 1-45 , doi:10.3390/ijms21072417 <http://dx.doi.org/10.3390/ijms21072417>. Lepeophtheirus salmonis chalimus Salmo salar fin transcriptome immunomodulation anti-sea lice response 44K microarray immunogenomics Article PeerReviewed 2020 ftunivtasmania https://doi.org/10.3390/ijms21072417 2021-10-04T22:19:00Z Parasitic sea lice (e.g., Lepeophtheirus salmonis) cause costly outbreaks in salmon farming. Molecular insights into parasite-induced host responses will provide the basis for improved management strategies. We investigated the early transcriptomic responses in pelvic fins of Atlantic salmon parasitized with chalimus I stage sea lice. Fin samples collected from non-infected (i.e., pre-infected) control (PRE) and at chalimus-attachment sites (ATT) and adjacent to chalimus-attachment sites (ADJ) from infected fish were used in profiling global gene expression using 44K microarrays. We identified 6568 differentially expressed probes (DEPs, FDR p L. salmonis. Article in Journal/Newspaper Atlantic salmon Salmo salar University of Tasmania: UTas ePrints International Journal of Molecular Sciences 21 7 2417 |
institution |
Open Polar |
collection |
University of Tasmania: UTas ePrints |
op_collection_id |
ftunivtasmania |
language |
English |
topic |
Lepeophtheirus salmonis chalimus Salmo salar fin transcriptome immunomodulation anti-sea lice response 44K microarray immunogenomics |
spellingShingle |
Lepeophtheirus salmonis chalimus Salmo salar fin transcriptome immunomodulation anti-sea lice response 44K microarray immunogenomics Umasuthan, N Xue, X Caballero-Solares, A Kumar, S Westcott, JD Chen, Z Fast, MD Skugor, S Nowak, BF Taylor, RG Rise, ML Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
topic_facet |
Lepeophtheirus salmonis chalimus Salmo salar fin transcriptome immunomodulation anti-sea lice response 44K microarray immunogenomics |
description |
Parasitic sea lice (e.g., Lepeophtheirus salmonis) cause costly outbreaks in salmon farming. Molecular insights into parasite-induced host responses will provide the basis for improved management strategies. We investigated the early transcriptomic responses in pelvic fins of Atlantic salmon parasitized with chalimus I stage sea lice. Fin samples collected from non-infected (i.e., pre-infected) control (PRE) and at chalimus-attachment sites (ATT) and adjacent to chalimus-attachment sites (ADJ) from infected fish were used in profiling global gene expression using 44K microarrays. We identified 6568 differentially expressed probes (DEPs, FDR p L. salmonis. |
format |
Article in Journal/Newspaper |
author |
Umasuthan, N Xue, X Caballero-Solares, A Kumar, S Westcott, JD Chen, Z Fast, MD Skugor, S Nowak, BF Taylor, RG Rise, ML |
author_facet |
Umasuthan, N Xue, X Caballero-Solares, A Kumar, S Westcott, JD Chen, Z Fast, MD Skugor, S Nowak, BF Taylor, RG Rise, ML |
author_sort |
Umasuthan, N |
title |
Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
title_short |
Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
title_full |
Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
title_fullStr |
Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
title_full_unstemmed |
Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
title_sort |
transcriptomic profiling in fins of atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response |
publisher |
Molecular Diversity Preservation International |
publishDate |
2020 |
url |
https://eprints.utas.edu.au/35010/ https://eprints.utas.edu.au/35010/1/140961%20-%20Transcriptomic%20profiling%20in%20fins%20of%20Atlantic%20salmon%20parasitized%20with%20sea%20lice.pdf |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://eprints.utas.edu.au/35010/1/140961%20-%20Transcriptomic%20profiling%20in%20fins%20of%20Atlantic%20salmon%20parasitized%20with%20sea%20lice.pdf Umasuthan, N, Xue, X, Caballero-Solares, A, Kumar, S, Westcott, JD, Chen, Z, Fast, MD, Skugor, S, Nowak, BF orcid:0000-0002-0347-643X , Taylor, RG and Rise, ML 2020 , 'Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense response' , International Journal of Molecular Sciences, vol. 21, no. 7 , pp. 1-45 , doi:10.3390/ijms21072417 <http://dx.doi.org/10.3390/ijms21072417>. |
op_doi |
https://doi.org/10.3390/ijms21072417 |
container_title |
International Journal of Molecular Sciences |
container_volume |
21 |
container_issue |
7 |
container_start_page |
2417 |
_version_ |
1766361008386867200 |