Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar)
Despite evidence for participation in the host response to infection, the roles of many long non-coding RNAs (lncRNAs) remain unknown. Therefore, the aims of this study were to identify lncRNAs in Atlantic salmon (Salmo salar) and evaluate their transcriptomic regulation during ISA virus (ISAV) infe...
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Online Access: | http://hdl.handle.net/1893/23335 https://doi.org/10.1038/srep22698 http://dspace.stir.ac.uk/bitstream/1893/23335/1/srep22698.pdf |
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ftunivstirling:oai:dspace.stir.ac.uk:1893/23335 2023-05-15T15:31:24+02:00 Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) Boltana, Sebastian Valenzuela-Miranda, Diego Aguilar, Andrea MacKenzie, Simon Gallardo-Escarate, Cristian University of Concepcion Institute of Aquaculture orcid:0000-0003-1845-6826 2016 application/pdf http://hdl.handle.net/1893/23335 https://doi.org/10.1038/srep22698 http://dspace.stir.ac.uk/bitstream/1893/23335/1/srep22698.pdf en eng Nature Publishing group Boltana S, Valenzuela-Miranda D, Aguilar A, MacKenzie S & Gallardo-Escarate C (2016) Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar). Scientific Reports, 6 (4), Art. No.: 22698. https://doi.org/10.1038/srep22698 22698 http://hdl.handle.net/1893/23335 doi:10.1038/srep22698 26939752 WOS:000371524200002 2-s2.0-84960481760 567381 http://dspace.stir.ac.uk/bitstream/1893/23335/1/srep22698.pdf This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/ CC-BY Journal Article VoR - Version of Record 2016 ftunivstirling https://doi.org/10.1038/srep22698 2022-06-13T18:45:21Z Despite evidence for participation in the host response to infection, the roles of many long non-coding RNAs (lncRNAs) remain unknown. Therefore, the aims of this study were to identify lncRNAs in Atlantic salmon (Salmo salar) and evaluate their transcriptomic regulation during ISA virus (ISAV) infection, an Orthomyxoviridae virus associated with high mortalities in salmonid aquaculture. Using next-generation sequencing, whole-transcriptome analysis of theSalmo salarresponse to ISAV infection was performed, identifying 5,636 putative lncRNAs with a mean length of 695 base pairs. The transcriptional modulation evidenced a similar number of differentially expressed lncRNAs in the gills (3,294), head-kidney (3,275), and liver (3,325) over the course of the infection. Moreover, analysis of a subset of these lncRNAs showed the following: (i) Most were similarly regulated in response to ISA virus infection; (ii) The transcript subsets were uniquely modulated in each tissue (gills, liver, and head-kidney); and (iii) A subset of lncRNAs were upregulated for each tissue and time analysed, indicating potential markers for ISAV infection. These findings represent the first discovery of widespread differential expression of lncRNAs in response to virus infection in non-model species, suggesting that lncRNAs could be involved in regulating the host response during ISAV infection. Article in Journal/Newspaper Atlantic salmon Salmo salar University of Stirling: Stirling Digital Research Repository Scientific Reports 6 1 |
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Open Polar |
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University of Stirling: Stirling Digital Research Repository |
op_collection_id |
ftunivstirling |
language |
English |
description |
Despite evidence for participation in the host response to infection, the roles of many long non-coding RNAs (lncRNAs) remain unknown. Therefore, the aims of this study were to identify lncRNAs in Atlantic salmon (Salmo salar) and evaluate their transcriptomic regulation during ISA virus (ISAV) infection, an Orthomyxoviridae virus associated with high mortalities in salmonid aquaculture. Using next-generation sequencing, whole-transcriptome analysis of theSalmo salarresponse to ISAV infection was performed, identifying 5,636 putative lncRNAs with a mean length of 695 base pairs. The transcriptional modulation evidenced a similar number of differentially expressed lncRNAs in the gills (3,294), head-kidney (3,275), and liver (3,325) over the course of the infection. Moreover, analysis of a subset of these lncRNAs showed the following: (i) Most were similarly regulated in response to ISA virus infection; (ii) The transcript subsets were uniquely modulated in each tissue (gills, liver, and head-kidney); and (iii) A subset of lncRNAs were upregulated for each tissue and time analysed, indicating potential markers for ISAV infection. These findings represent the first discovery of widespread differential expression of lncRNAs in response to virus infection in non-model species, suggesting that lncRNAs could be involved in regulating the host response during ISAV infection. |
author2 |
University of Concepcion Institute of Aquaculture orcid:0000-0003-1845-6826 |
format |
Article in Journal/Newspaper |
author |
Boltana, Sebastian Valenzuela-Miranda, Diego Aguilar, Andrea MacKenzie, Simon Gallardo-Escarate, Cristian |
spellingShingle |
Boltana, Sebastian Valenzuela-Miranda, Diego Aguilar, Andrea MacKenzie, Simon Gallardo-Escarate, Cristian Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
author_facet |
Boltana, Sebastian Valenzuela-Miranda, Diego Aguilar, Andrea MacKenzie, Simon Gallardo-Escarate, Cristian |
author_sort |
Boltana, Sebastian |
title |
Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
title_short |
Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
title_full |
Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
title_fullStr |
Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
title_full_unstemmed |
Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
title_sort |
long noncoding rnas (lncrnas) dynamics evidence immunomodulation during isav-infected atlantic salmon (salmo salar) |
publisher |
Nature Publishing group |
publishDate |
2016 |
url |
http://hdl.handle.net/1893/23335 https://doi.org/10.1038/srep22698 http://dspace.stir.ac.uk/bitstream/1893/23335/1/srep22698.pdf |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
Boltana S, Valenzuela-Miranda D, Aguilar A, MacKenzie S & Gallardo-Escarate C (2016) Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar). Scientific Reports, 6 (4), Art. No.: 22698. https://doi.org/10.1038/srep22698 22698 http://hdl.handle.net/1893/23335 doi:10.1038/srep22698 26939752 WOS:000371524200002 2-s2.0-84960481760 567381 http://dspace.stir.ac.uk/bitstream/1893/23335/1/srep22698.pdf |
op_rights |
This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1038/srep22698 |
container_title |
Scientific Reports |
container_volume |
6 |
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1 |
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1766361894297272320 |