Ancient DNA reveals interstadials as a driver of the common vole population dynamics during the last glacial period

• Main Authors: Baca, Mateusz, Popović, Danijela, Lemanik, Anna, Bañuls-Cardona, Sandra, Conard, Nicholas, Cuenca-Bescós, Gloria, Desclaux, Emmanuel, Fewlass, Helen, Garcia, Jesus, Hadravova, Tereza, Heckel, Gerald, Horáček, Ivan, Knul, Monika, Lebreton, Loïc, López-García, Juan, Luzi, Eliza, Marković, Zoran, Lenardić, Jadranka, Murelaga, Xabier, Noiret, Pierre, Petculescu, Alexandru, Popov, Vasil, Rhodes, Sara, Ridush, Bogdan, Royer, Aurélien, Stewart, John, Stojak, Joanna, Talamo, Sahra, Wang, Xuejing, Wójcik, Jan, Nadachowski, Adam
• Other Authors: Culture et Environnements, Préhistoire, Antiquité, Moyen-Age (CEPAM), Université Nice Sophia Antipolis (1965 - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)
• Format: Report
• Language: English
• Published: HAL CCSD 2022
• Subjects: ancient DNA; Microtus arvalis; habitat; Late Pleistocene; paleoclimate; small mammals; [SHS.ARCHEO]Humanities and Social Sciences/Archaeology and Prehistory; [SDV.BBM]Life Sciences [q-bio]/Biochemistry; Molecular Biology; Common vole
• Online Access: https://hal.archives-ouvertes.fr/hal-03753269; https://hal.archives-ouvertes.fr/hal-03753269/document; https://hal.archives-ouvertes.fr/hal-03753269/file/2022.08.09.503016v1.full.pdf; https://doi.org/10.1101/2022.08.09.503016

The common vole is a temperate rodent widespread across Europe. It was also one of the most abundant small mammal species throughout the Late Pleistocene. Phylogeographic studies of its extant populations suggested the Last Glacial Maximum (LGM, 26.5–19 ka ago) as one of the main drivers of the species’ population dynamics. However, analyses based solely on extant genetic diversity may not recover the full complexity of past population history. The main aim of this study was to investigate the evolutionary history and identify the main drivers of the common vole population dynamics during the Late Pleistocene in Europe. We generated a dataset comprising 4.2 kb-long fragment of mitochondrial DNA from 148 63 ancient and 51 modern specimens sampled from multiple localities across Europe and covering the last 60 thousand years (ka). We used Bayesian inference to reconstruct their phylogenetic relationships and to estimate the age of specimens that were not directly dated. We estimate the time to the most recent common ancestor of all Last Glacial and extant common vole lineages to 90 ka ago and the divergence of the main mtDNA lineages present in extantpopulations to between 55 and 40 ka ago, earlier than previous estimates. We find multiple lineage turnovers in Europe in the period of high climate variability at the end of Marine Isotope Stage 3 (MIS 3; 57–29 ka ago) in addition to those found previously around the Pleistocene/Holocene transition. Conversely, data from the Western Carpathians suggest continuity throughout the LGM even at high latitudes. Our results suggest that the main factor affecting the common vole populations during the last glacial period was the reduction of open habitats during the interstadial periods while the climate deterioration during the LGM had little impact on species’ population dynamics.