Heatmap of nonvisual opsins and clock genes in Atlantic salmon.
The heatmap, scaled by row, shows the average normalized counts for nonvisual opsins (see S3 Table for annotations) and clock genes (see [ 38 ] for annotations) in the developmental series of embryos and alevins reared in light-dark cycles of medium intensity (LDM). Genes not expressed or not annota...
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ftunivfreestate:oai:figshare.com:article/21711969 2023-05-15T15:31:08+02:00 Heatmap of nonvisual opsins and clock genes in Atlantic salmon. Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) 2022-12-12T18:22:53Z https://doi.org/10.1371/journal.pgen.1010529.g001 unknown https://figshare.com/articles/figure/Heatmap_of_nonvisual_opsins_and_clock_genes_in_Atlantic_salmon_/21711969 doi:10.1371/journal.pgen.1010529.g001 CC BY 4.0 CC-BY Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Image Figure 2022 ftunivfreestate https://doi.org/10.1371/journal.pgen.1010529.g001 2022-12-16T00:33:51Z The heatmap, scaled by row, shows the average normalized counts for nonvisual opsins (see S3 Table for annotations) and clock genes (see [ 38 ] for annotations) in the developmental series of embryos and alevins reared in light-dark cycles of medium intensity (LDM). Genes not expressed or not annotated at Ensembl were not included. The heatmaps show that many nonvisual opsins and clock genes are expressed early in development. Still Image Atlantic salmon Salmo salar KovsieScholar Repository (University of the Free State - UFS UV) |
institution |
Open Polar |
collection |
KovsieScholar Repository (University of the Free State - UFS UV) |
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ftunivfreestate |
language |
unknown |
topic |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated |
spellingShingle |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
topic_facet |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated |
description |
The heatmap, scaled by row, shows the average normalized counts for nonvisual opsins (see S3 Table for annotations) and clock genes (see [ 38 ] for annotations) in the developmental series of embryos and alevins reared in light-dark cycles of medium intensity (LDM). Genes not expressed or not annotated at Ensembl were not included. The heatmaps show that many nonvisual opsins and clock genes are expressed early in development. |
format |
Still Image |
author |
Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) |
author_facet |
Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) |
author_sort |
Mariann Eilertsen (11502317) |
title |
Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
title_short |
Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
title_full |
Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
title_fullStr |
Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
title_full_unstemmed |
Heatmap of nonvisual opsins and clock genes in Atlantic salmon. |
title_sort |
heatmap of nonvisual opsins and clock genes in atlantic salmon. |
publishDate |
2022 |
url |
https://doi.org/10.1371/journal.pgen.1010529.g001 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://figshare.com/articles/figure/Heatmap_of_nonvisual_opsins_and_clock_genes_in_Atlantic_salmon_/21711969 doi:10.1371/journal.pgen.1010529.g001 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pgen.1010529.g001 |
_version_ |
1766361628392030208 |