| Summary: | Dissertation (Ph.D.) University of Alaska Fairbanks, 2012 Alaskan caribou (Rangifer tarandus granti) are a valued game species and a key grazer in Alaska's terrestrial ecosystem. Caribou herds, defined by female fidelity to calving grounds, are management units. However, the extent to which herds constitute genetic populations is unknown. Historical fluctuations in herd size, range, and distribution suggest periods of contact and isolation between herds. Likewise, historical contact between caribou and introduced domestic reindeer (R.t. tarandus) created opportunities for hybridization, but its extent is not known. I conducted an interdisciplinary study to understand how historical processes influence genetic identity and population structure of caribou and reindeer. Interviews with herders and hunters in Barrow, Alaska, revealed that many reindeer migrated away with caribou in the 1940s despite herder efforts to prevent mixing. Local observations of reindeer-like animals in caribou herds today suggest feral reindeer may survive and interbreed. Using genetic analysis of North Slope caribou and Seward Peninsula reindeer (n = 312) at 19 microsatellite loci, I detected individuals with hybrid ancestry in all four caribou herds and in reindeer. Selective hunting of reindeer-like animals, along with herd size and natural selection, may remove reindeer from caribou herds over time. I used genetics as well to describe caribou population structure and determine how it is influenced by geography, historical demography, and ecotypes. I found that Alaskan caribou from 20 herds (n = 655) are subdivided into two genetic clusters: the Alaska Peninsula and the mainland. Alaska Peninsula herds are genetically distinct, while many mainland herds are not. I hypothesize that Alaska Peninsula herds have diverged due to post-glacial founder effects and recent bottlenecks driven by constraints to population size from marginal habitat and reduced gene flow across a habitat barrier at the nexus of the peninsula. I hypothesize that ...
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