| Summary: | Lizards and snakes (squamates) are the most diverse endemic component of the Australian terrestrial vertebrate fauna; and three families of Pygopodoid gecko (Carphodactylidae, Diplodactylidae and Pygopodidae) together comprise the third most species rich squamate lineage within Australia. In this thesis I present the results of an analysis of the systematics and species diversity of components of the Australian pygopodoid gecko radation; specifically, I focus on establishing an overall systematic and temporal framework for the evolution of the entire clade, examining estimates of species diversity and interrelationships within three genera, and using the resultant phylogenetic framework to advance our understanding of how the onset and expansion of aridification across Australia may have affected evolution with this lineage. In chapter two the phylogenetic relationships of all Australian pygopodoid genera (except Orraya) are examined, and temporal scale for their diversification is estimated based on Bayesian and Likelihood analyses of two nuclear genes. This work demonstrates that at least five extant lineages within this radiation diverged before the final separation of Australia from Antarctica, and that the clade has a long history within Australia equivalent to famous Gondwanan elements of the fauna, such as the Marsupials. An analysis of systematic relationships within the genus Diplodactylus based on mitochondrial DNA and morphological data indicate that as recognised previously, it comprises two genetically distinct and morphologically diagnosable clades; we resurrect the name Lucasium for one of the these clades. Both genera appear to represent moderately diverse and broadly overlapping radiations of multiple taxa largely restricted to arid and semi-arid Australia, but absent from relatively mesic coastal areas, especially along the east, suggesting semi-arid to arid habitats have a long history within Australia. A multilocus (mitochondrial, alloyme and karyotypic) examination of species boundaries ...
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