Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla
Vertebrate genomes encode a diversity of G protein-coupled receptors (GPCR) that belong to large gene families and are used by olfactory systems to detect chemical cues found in the environment. It is not clear however, if individual receptors from these large gene families have evolved roles that a...
Main Authors: | , , , , |
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Format: | Dataset |
Language: | unknown |
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Data Archiving and Networked Services (DANS)
2019
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Online Access: | https://doi.org/10.5061/dryad.qp578 |
_version_ | 1821493064018952192 |
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author | Churcher, Allison M. Hubbard, Peter C. Marques, João P. Canário, Adelino V. M. Huertas, Mar |
author_facet | Churcher, Allison M. Hubbard, Peter C. Marques, João P. Canário, Adelino V. M. Huertas, Mar |
author_sort | Churcher, Allison M. |
collection | Unknown |
description | Vertebrate genomes encode a diversity of G protein-coupled receptors (GPCR) that belong to large gene families and are used by olfactory systems to detect chemical cues found in the environment. It is not clear however, if individual receptors from these large gene families have evolved roles that are specific to certain life stages. Here, we used deep sequencing to identify differentially expressed receptor transcripts in the olfactory epithelia (OE) of freshwater, seawater and sexually mature male eels (Anguilla anguilla). This species is particularly intriguing because of its complex life cycle, extreme long distance migrations and early-branching position within the teleost phylogeny. In the A. anguilla OE, we identified full-length transcripts for 13, 112, 6 and 38 trace-amine associated receptors (TAAR), odorant receptors (OR) and type I and type II vomeronasal receptors (V1R and V2R). Most of these receptors were expressed at similar levels at different life stages and that a subset of OR and V2R-like transcripts were more abundant in sexually mature males suggesting that ORs and V2R-like genes are important for reproduction. We also identified a set of GPCR signal transduction genes that were differentially expressed indicating that eels make use of different GPCR signal transduction genes at different life stages. The finding that a diversity of chemosensory receptors are expressed in the olfactory epithelium and that a subset are differentially expressed suggest that most receptors belonging to large chemosensory gene families have functions that are important at multiple life stages while a subset have evolved specific functions at different life stages. Aanguilla olfactory epithelium transcriptome assemblyThis is the Trinity assembled olfactory epithelium transcriptome (Illiumna HiSeq 2000) for Anguilla anguilla.Aanguilla_olfactory_epithelium_transcriptome_assembly.fastaAanguilla_olfactory_expression_dataThese are the expression data for the olfactory epithelium of freshwater (FW), seawater (SW) and ... |
format | Dataset |
genre | Anguilla anguilla European eel |
genre_facet | Anguilla anguilla European eel |
id | fttriple:oai:gotriple.eu:50|dedup_wf_001::e9d0418ed6f05365a485414339bb2bb7 |
institution | Open Polar |
language | unknown |
op_collection_id | fttriple |
op_doi | https://doi.org/10.5061/dryad.qp578 |
op_relation | http://dx.doi.org/10.5061/dryad.qp578 https://dx.doi.org/10.5061/dryad.qp578 |
op_rights | lic_creative-commons |
op_source | oai:easy.dans.knaw.nl:easy-dataset:87154 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:87154 10.5061/dryad.qp578 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c re3data_____::r3d100000044 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 |
publishDate | 2019 |
publisher | Data Archiving and Networked Services (DANS) |
record_format | openpolar |
spelling | fttriple:oai:gotriple.eu:50|dedup_wf_001::e9d0418ed6f05365a485414339bb2bb7 2025-01-16T18:57:25+00:00 Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla Churcher, Allison M. Hubbard, Peter C. Marques, João P. Canário, Adelino V. M. Huertas, Mar 2019-07-15 https://doi.org/10.5061/dryad.qp578 undefined unknown Data Archiving and Networked Services (DANS) http://dx.doi.org/10.5061/dryad.qp578 https://dx.doi.org/10.5061/dryad.qp578 lic_creative-commons oai:easy.dans.knaw.nl:easy-dataset:87154 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:87154 10.5061/dryad.qp578 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c re3data_____::r3d100000044 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 Life sciences medicine and health care olfactory receptors differential gene expression reproduction transcriptome olfactory epithelium Anguilla anguilla envir psy Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2019 fttriple https://doi.org/10.5061/dryad.qp578 2023-01-22T17:22:39Z Vertebrate genomes encode a diversity of G protein-coupled receptors (GPCR) that belong to large gene families and are used by olfactory systems to detect chemical cues found in the environment. It is not clear however, if individual receptors from these large gene families have evolved roles that are specific to certain life stages. Here, we used deep sequencing to identify differentially expressed receptor transcripts in the olfactory epithelia (OE) of freshwater, seawater and sexually mature male eels (Anguilla anguilla). This species is particularly intriguing because of its complex life cycle, extreme long distance migrations and early-branching position within the teleost phylogeny. In the A. anguilla OE, we identified full-length transcripts for 13, 112, 6 and 38 trace-amine associated receptors (TAAR), odorant receptors (OR) and type I and type II vomeronasal receptors (V1R and V2R). Most of these receptors were expressed at similar levels at different life stages and that a subset of OR and V2R-like transcripts were more abundant in sexually mature males suggesting that ORs and V2R-like genes are important for reproduction. We also identified a set of GPCR signal transduction genes that were differentially expressed indicating that eels make use of different GPCR signal transduction genes at different life stages. The finding that a diversity of chemosensory receptors are expressed in the olfactory epithelium and that a subset are differentially expressed suggest that most receptors belonging to large chemosensory gene families have functions that are important at multiple life stages while a subset have evolved specific functions at different life stages. Aanguilla olfactory epithelium transcriptome assemblyThis is the Trinity assembled olfactory epithelium transcriptome (Illiumna HiSeq 2000) for Anguilla anguilla.Aanguilla_olfactory_epithelium_transcriptome_assembly.fastaAanguilla_olfactory_expression_dataThese are the expression data for the olfactory epithelium of freshwater (FW), seawater (SW) and ... Dataset Anguilla anguilla European eel Unknown |
spellingShingle | Life sciences medicine and health care olfactory receptors differential gene expression reproduction transcriptome olfactory epithelium Anguilla anguilla envir psy Churcher, Allison M. Hubbard, Peter C. Marques, João P. Canário, Adelino V. M. Huertas, Mar Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title | Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title_full | Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title_fullStr | Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title_full_unstemmed | Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title_short | Data from: Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla |
title_sort | data from: deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the european eel anguilla anguilla |
topic | Life sciences medicine and health care olfactory receptors differential gene expression reproduction transcriptome olfactory epithelium Anguilla anguilla envir psy |
topic_facet | Life sciences medicine and health care olfactory receptors differential gene expression reproduction transcriptome olfactory epithelium Anguilla anguilla envir psy |
url | https://doi.org/10.5061/dryad.qp578 |