Data from: Identifying patterns of dispersal, connectivity, and selection in the sea scallop, Placopecten magellanicus, using RAD-seq derived SNPs

Understanding patterns of dispersal and connectivity among marine populations can directly inform fisheries conservation and management. Advances in high-throughput sequencing offer new opportunities for estimating marine connectivity. We used Restriction-site Associated DNA sequencing to examine di...

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Bibliographic Details
Main Authors: Van Wyngaarden, Mallory, Snelgrove, Paul V.R., DiBacco, Claudio, Hamilton, Lorraine C., Rodríguez-Ezpeleta, Naiara, Jeffery, Nicholas W., Stanley, Ryan R., Bradbury, Ian R., Stanley, Ryan R. E., Snelgrove, Paul V. R.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
geo
Online Access:https://doi.org/10.5061/dryad.2nh23
Description
Summary:Understanding patterns of dispersal and connectivity among marine populations can directly inform fisheries conservation and management. Advances in high-throughput sequencing offer new opportunities for estimating marine connectivity. We used Restriction-site Associated DNA sequencing to examine dispersal and realized connectivity in the sea scallop Placopecten magellanicus, an economically important marine bivalve. Based on 245 individuals sampled range-wide at 12 locations from Newfoundland to the Mid-Atlantic Bight we identified and genotyped 7163 Single Nucleotide Polymorphisms; 112 (1.6%) were identified as outliers potentially under directional selection. Bayesian clustering revealed a discontinuity between northern and southern samples and latitudinal clines in allele frequencies were observed in 42.9% of the outlier loci and in 24.6% of neutral loci. Dispersal estimates derived using these clines and estimates of linkage disequilibrium imply limited dispersal; 373.1 ± 407.0 km (mean ± SD) for outlier loci and 641.0 ± 544.6 km (mean ± SD) for neutral loci. Our analysis suggests restricted dispersal compared to the species range (>2000 km) and that dispersal and effective connectivity differ. These observations support the hypothesis that limited effective dispersal structures scallop populations along eastern North America. These findings can help refine the appropriate scale of management and conservation in this commercially valuable species. VanWyngaardenM_etal_GeogDistMatrixThis file contains matrices of pairwise geographic distances (km; shortest distance and estimated ocean current-based distance) between 12 populations of the sea scallop, Placopecten magellanicus, used along with 7163 RAD-seq derived SNPs to estimate isolation-by-distance and dispersal distances among populations. Population names and geographic coordinates can be found in Table 1 of the associated publication.VanWyngaardenM_etal_PopStructure_GeogDist.xlsxVanWyngaardenM_etal_RADseq_SNPsThis VCF file contains 7216 RAD-seq ...