Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.

Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarct...

Full description

Bibliographic Details
Main Authors: Srijana Mukhia (9025058), Anil Kumar (105720), Poonam Kumari (6175139), Rakshak Kumar (125841), Sanjay Kumar (8853)
Format: Still Image
Language:unknown
Published: 2022
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0261178.g003
id ftsmithonian:oai:figshare.com:article/19021503
record_format openpolar
spelling ftsmithonian:oai:figshare.com:article/19021503 2023-05-15T14:04:45+02:00 Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) 2022-01-24T18:29:42Z https://doi.org/10.1371/journal.pone.0261178.g003 unknown https://figshare.com/articles/figure/Phylogenetic_tree_of_11_i_Pseudomonas_i_study_strains_based_on_the_concatenated_sequences_of_protein-coding_genes_i_gyrB-ileS-nuoD-recA-rpoD_i_using_RAxML_/19021503 doi:10.1371/journal.pone.0261178.g003 CC BY 4.0 CC-BY Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pone.0261178.g003 2022-02-07T17:36:48Z Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarctica PAMC 27494. E . coli K12 MG1655 was used as the outgroup organism. Partitionfinder v2.1.1 was used to determine the best-fit partitioning schemes and substitution models of molecular evolution. Still Image Antarc* Antarctica Unknown
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
spellingShingle Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
topic_facet Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
description Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarctica PAMC 27494. E . coli K12 MG1655 was used as the outgroup organism. Partitionfinder v2.1.1 was used to determine the best-fit partitioning schemes and substitution models of molecular evolution.
format Still Image
author Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_facet Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_sort Srijana Mukhia (9025058)
title Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
title_short Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
title_full Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
title_fullStr Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
title_full_unstemmed Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
title_sort phylogenetic tree of 11 pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrb-iles-nuod-reca-rpod using raxml.
publishDate 2022
url https://doi.org/10.1371/journal.pone.0261178.g003
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation https://figshare.com/articles/figure/Phylogenetic_tree_of_11_i_Pseudomonas_i_study_strains_based_on_the_concatenated_sequences_of_protein-coding_genes_i_gyrB-ileS-nuoD-recA-rpoD_i_using_RAxML_/19021503
doi:10.1371/journal.pone.0261178.g003
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0261178.g003
_version_ 1766276015428993024