Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML.
Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarct...
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ftsmithonian:oai:figshare.com:article/19021503 2023-05-15T14:04:45+02:00 Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) 2022-01-24T18:29:42Z https://doi.org/10.1371/journal.pone.0261178.g003 unknown https://figshare.com/articles/figure/Phylogenetic_tree_of_11_i_Pseudomonas_i_study_strains_based_on_the_concatenated_sequences_of_protein-coding_genes_i_gyrB-ileS-nuoD-recA-rpoD_i_using_RAxML_/19021503 doi:10.1371/journal.pone.0261178.g003 CC BY 4.0 CC-BY Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pone.0261178.g003 2022-02-07T17:36:48Z Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarctica PAMC 27494. E . coli K12 MG1655 was used as the outgroup organism. Partitionfinder v2.1.1 was used to determine the best-fit partitioning schemes and substitution models of molecular evolution. Still Image Antarc* Antarctica Unknown |
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ftsmithonian |
language |
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topic |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could |
spellingShingle |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
topic_facet |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could |
description |
Support values are calculated from 1000 rapid bootstrap replicates (BT). BT values of 50 or more are indicated at branching points. The scale bar corresponds to the average number of nucleotide substitutions per site. Our test strains are marked in bold, that form a separate cluster with P . antarctica PAMC 27494. E . coli K12 MG1655 was used as the outgroup organism. Partitionfinder v2.1.1 was used to determine the best-fit partitioning schemes and substitution models of molecular evolution. |
format |
Still Image |
author |
Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) |
author_facet |
Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) |
author_sort |
Srijana Mukhia (9025058) |
title |
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
title_short |
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
title_full |
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
title_fullStr |
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
title_full_unstemmed |
Phylogenetic tree of 11 Pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrB-ileS-nuoD-recA-rpoD using RAxML. |
title_sort |
phylogenetic tree of 11 pseudomonas study strains based on the concatenated sequences of protein-coding genes gyrb-iles-nuod-reca-rpod using raxml. |
publishDate |
2022 |
url |
https://doi.org/10.1371/journal.pone.0261178.g003 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
https://figshare.com/articles/figure/Phylogenetic_tree_of_11_i_Pseudomonas_i_study_strains_based_on_the_concatenated_sequences_of_protein-coding_genes_i_gyrB-ileS-nuoD-recA-rpoD_i_using_RAxML_/19021503 doi:10.1371/journal.pone.0261178.g003 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0261178.g003 |
_version_ |
1766276015428993024 |