Circos plot of pink salmon genome assembly.

• Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
• Format: Still Image
• Language: unknown
• Published: 2021
• Subjects: Microbiology; Genetics; Evolutionary Biology; Ecology; Inorganic Chemistry; Science Policy; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; western pacific ocean; six canadian rivers; one japanese river; oncorhynchus gorbuscha </; reference genome assemblies; year life history; salmon fishery worldwide; largest fst peak; year genome near; pink salmon (<; year temporal isolation; div >< p; could influence speciation; fst peaks may; pink salmon genome; pink salmon; whole genome; genome influenced; identified peaks; genetic isolation; spawn either; sequencing data; reduced recombination; pairs long; organ development; multiple centromeres; mostly associated; large proportion; immune function; genomic consequences; genetic drift; genes related; commercial value; >) adults; Pacific; Oncorhynchus gorbuscha; Pink salmon
• Online Access: https://doi.org/10.1371/journal.pone.0255752.g001

Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-year salmon greater than 0.25. Values greater than 0.5 are highlighted red. B) The fraction of repetitive DNA as identified by NCBI (odd-year). Values greater than 0.65 are highlighted red. C) The percent identity between homeologous regions identified by SyMap (scale 75–100%). Values greater than 90% are highlighted red. D) A Marey map with markers from the genetic map (y-axis, 0–1, with 1 being the marker with the greatest cM value) placed onto the genome (x-axis, odd-year).