Circos plot of pink salmon genome assembly.
Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-y...
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2021
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Online Access: | https://doi.org/10.1371/journal.pone.0255752.g001 |
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ftsmithonian:oai:figshare.com:article/17265994 |
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ftsmithonian:oai:figshare.com:article/17265994 2023-05-15T17:52:52+02:00 Circos plot of pink salmon genome assembly. Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) 2021-12-17T18:44:57Z https://doi.org/10.1371/journal.pone.0255752.g001 unknown https://figshare.com/articles/figure/Circos_plot_of_pink_salmon_genome_assembly_/17265994 doi:10.1371/journal.pone.0255752.g001 CC BY 4.0 CC-BY Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults Image Figure 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0255752.g001 2021-12-19T19:12:42Z Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-year salmon greater than 0.25. Values greater than 0.5 are highlighted red. B) The fraction of repetitive DNA as identified by NCBI (odd-year). Values greater than 0.65 are highlighted red. C) The percent identity between homeologous regions identified by SyMap (scale 75–100%). Values greater than 90% are highlighted red. D) A Marey map with markers from the genetic map (y-axis, 0–1, with 1 being the marker with the greatest cM value) placed onto the genome (x-axis, odd-year). Still Image Oncorhynchus gorbuscha Pink salmon Unknown Pacific |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults |
spellingShingle |
Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) Circos plot of pink salmon genome assembly. |
topic_facet |
Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults |
description |
Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-year salmon greater than 0.25. Values greater than 0.5 are highlighted red. B) The fraction of repetitive DNA as identified by NCBI (odd-year). Values greater than 0.65 are highlighted red. C) The percent identity between homeologous regions identified by SyMap (scale 75–100%). Values greater than 90% are highlighted red. D) A Marey map with markers from the genetic map (y-axis, 0–1, with 1 being the marker with the greatest cM value) placed onto the genome (x-axis, odd-year). |
format |
Still Image |
author |
Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) |
author_facet |
Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) |
author_sort |
Kris A. Christensen (3797896) |
title |
Circos plot of pink salmon genome assembly. |
title_short |
Circos plot of pink salmon genome assembly. |
title_full |
Circos plot of pink salmon genome assembly. |
title_fullStr |
Circos plot of pink salmon genome assembly. |
title_full_unstemmed |
Circos plot of pink salmon genome assembly. |
title_sort |
circos plot of pink salmon genome assembly. |
publishDate |
2021 |
url |
https://doi.org/10.1371/journal.pone.0255752.g001 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Oncorhynchus gorbuscha Pink salmon |
genre_facet |
Oncorhynchus gorbuscha Pink salmon |
op_relation |
https://figshare.com/articles/figure/Circos_plot_of_pink_salmon_genome_assembly_/17265994 doi:10.1371/journal.pone.0255752.g001 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0255752.g001 |
_version_ |
1766160611749658624 |