Circos plot of pink salmon genome assembly.

Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-y...

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Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
Format: Still Image
Language:unknown
Published: 2021
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Online Access:https://doi.org/10.1371/journal.pone.0255752.g001
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Summary:Positions are all based on the odd-year genome assembly. Chromosomes/linkage groups are noted with blue boxes representing the centromere identified in Tarpey et al. (2017) [ 64 ]. Links between chromosomes are homeologous regions identified using SyMap. A) Fst values between all odd-year and even-year salmon greater than 0.25. Values greater than 0.5 are highlighted red. B) The fraction of repetitive DNA as identified by NCBI (odd-year). Values greater than 0.65 are highlighted red. C) The percent identity between homeologous regions identified by SyMap (scale 75–100%). Values greater than 90% are highlighted red. D) A Marey map with markers from the genetic map (y-axis, 0–1, with 1 being the marker with the greatest cM value) placed onto the genome (x-axis, odd-year).