Sex determining region of the even-year pink salmon with genotype information.

• Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
• Format: Still Image
• Language: unknown
• Published: 2021
• Subjects: Microbiology; Genetics; Evolutionary Biology; Ecology; Inorganic Chemistry; Science Policy; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; western pacific ocean; six canadian rivers; one japanese river; oncorhynchus gorbuscha </; reference genome assemblies; year life history; salmon fishery worldwide; largest fst peak; year genome near; pink salmon (<; year temporal isolation; div >< p; could influence speciation; fst peaks may; pink salmon genome; pink salmon; whole genome; genome influenced; identified peaks; genetic isolation; spawn either; sequencing data; reduced recombination; pairs long; organ development; multiple centromeres; mostly associated; large proportion; immune function; genomic consequences; genetic drift; genes related; commercial value; >) adults; Pacific; The ''Y''; Oncorhynchus gorbuscha; Pink salmon
• Online Access: https://doi.org/10.1371/journal.pone.0255752.s006

Genotypes are shown from an IGV [ 112 ] screenshot for the 61 samples of pink salmon for the region with the sdY sex-determining gene. The top portion shows the distance of the Y-specific genome region (~3.2 Mbp) and the contig/scaffold boundaries that make up this region are shown as vertical lines. Below the distances, allele frequencies for each locus are shown, and below that individual genotypes. The x-axis of the genotypes represent loci and each line on the y-axis represents an individual pink salmon. The dark-blue colour is a homozygous reference genotype, the light-blue colour a heterozygous genotype, and the green genotype is for a homozygous alternative locus. There are large stretches (1–2 Mbp) of heterozygosity and homozygosity based on sex. Please note that there is a possible inversion (from a mis-assembly) in this region as the runs of homozygosity and heterozygosity are broken by a section from ~600 kbp and ~1,300 kbp. (TIF)