| Summary: | Genotypes are shown from an IGV [ 112 ] screenshot for the 61 samples of pink salmon for the region with the sdY sex-determining gene. The top portion shows the distance of the Y-specific genome region (~3.2 Mbp) and the contig/scaffold boundaries that make up this region are shown as vertical lines. Below the distances, allele frequencies for each locus are shown, and below that individual genotypes. The x-axis of the genotypes represent loci and each line on the y-axis represents an individual pink salmon. The dark-blue colour is a homozygous reference genotype, the light-blue colour a heterozygous genotype, and the green genotype is for a homozygous alternative locus. There are large stretches (1–2 Mbp) of heterozygosity and homozygosity based on sex. Please note that there is a possible inversion (from a mis-assembly) in this region as the runs of homozygosity and heterozygosity are broken by a section from ~600 kbp and ~1,300 kbp. (TIF)
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