Additional file 4 of Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs

Additional file 4. UNIFRAC nmMDS. Filtered sequences were aligned using MAFFT [110], and phylogenetic tree built using FASTTREE [111] using default parameters within the QIIME2 pipeline. The resultant UNIFRAC distance matrix was used in generation of non-metric multidimensional scaling analysis as s...

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Bibliographic Details
Main Authors: Morag Clinton (11678457), Adam J. Wyness (10170055), Samuel A. M. Martin (8994104), Andrew S. Brierley (11678460), David E. K. Ferrier (9526432)
Format: Dataset
Language:unknown
Published: 2021
Subjects:
Microbiology
Experimental design
Sampling methodology
Gill microbiota
Microbial assemblages
Aquaculture
Atlantic salmon
Veterinary microbiology
Online Access:https://doi.org/10.6084/m9.figshare.16986729.v1
Description
Summary:Additional file 4. UNIFRAC nmMDS. Filtered sequences were aligned using MAFFT [110], and phylogenetic tree built using FASTTREE [111] using default parameters within the QIIME2 pipeline. The resultant UNIFRAC distance matrix was used in generation of non-metric multidimensional scaling analysis as shown here. Results of PERMANOVA using unrestricted permutations for comparison of samples by sample type (swab;biopsy;environmental) shown in table indicate significant variation by sample type.

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