Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This tabl...

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Bibliographic Details
Main Authors: Raminta Kazlauskaite (11368785), Bachar Cheaib (718391), Chloe Heys (3267108), Umer Zeeshan Ijaz (3769318), Stephanie Connelly (8926943), William Sloan (523554), Julie Russel (11368788), Laura Rubio (2662996), John Sweetman (739905), Alex Kitts (11368791), Philip McGinnity (3250896), Philip Lyons (11368794), Martin Llewellyn (6532214)
Format: Dataset
Language:unknown
Published: 2021
Subjects:
Microbiology
Genetics
SalmoSim
Gut microbiota
In vitro gut model system
Atlantic salmon
NGS
Online Access:https://doi.org/10.6084/m9.figshare.16551234.v1
Description
Summary:Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1.

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