Additional file 13 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

Additional file 12: Figure S6. Stability within SalmoSim system calculated by using different UniFrac values for pairwise beta diversity analysis. The figure represents microbial stability within the SalmoSim system (data from all gut compartments and two different technical replicate runs combined)...

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Bibliographic Details
Main Authors: Raminta Kazlauskaite (11368785), Bachar Cheaib (718391), Chloe Heys (3267108), Umer Zeeshan Ijaz (3769318), Stephanie Connelly (8926943), William Sloan (523554), Julie Russel (11368788), Laura Rubio (2662996), John Sweetman (739905), Alex Kitts (11368791), Philip McGinnity (3250896), Philip Lyons (11368794), Martin Llewellyn (6532214)
Format: Other Non-Article Part of Journal/Newspaper
Language:unknown
Published: 2021
Subjects:
Microbiology
Genetics
SalmoSim
Gut microbiota
In vitro gut model system
Atlantic salmon
NGS
Online Access:https://doi.org/10.6084/m9.figshare.16551210.v1
Description
Summary:Additional file 12: Figure S6. Stability within SalmoSim system calculated by using different UniFrac values for pairwise beta diversity analysis. The figure represents microbial stability within the SalmoSim system (data from all gut compartments and two different technical replicate runs combined) as the pairwise beta diversity comparison between different sampling time points (days), calculated by using unweighted (0%), generalised (50%) and weighted (100%) UniFrac as a distance measure. A small p-value indicates that the two time points are statistically different, and p>0.05 indicates that two time points are not statistically different. The colour key illustrates the p-value: red end of spectrum denoting low p values (distinct compositions between time points) and dark green indicating high p values (similar compositions between timepoints).

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