Bayesian phylogenetic tree of Hymenolepis microstoma NRs.

The phylogenetic tree of H . microstoma NRs represents all analyzed Hymenolepis species because of the highly conserved DBD sequences in these species. Methods for construction of phylogenetic trees see S1 Fig legend. ML model tested as LG+G+I (Equilibrium frequencies: Model, Proportion of invariabl...

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Bibliographic Details
Main Authors: Wenjie Wu (81279), Philip T. LoVerde (7548587)
Format: Still Image
Language:unknown
Published: 2021
Subjects:
Biochemistry
Medicine
Cell Biology
Genetics
Evolutionary Biology
Ecology
Infectious Diseases
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
free-living intertidal zone flatworm
novel zinc finger motif
Platyhelminth NRs
flatworm genome data
NR subfamily 3
CHC 2 motif
Platyhelminth HR 96b
DBD
DNA binding domain
C 4-type zinc finger motifs
NR gene duplication
Crassostrea gigas
Online Access:https://doi.org/10.1371/journal.pone.0250750.s005
Description
Summary:The phylogenetic tree of H . microstoma NRs represents all analyzed Hymenolepis species because of the highly conserved DBD sequences in these species. Methods for construction of phylogenetic trees see S1 Fig legend. ML model tested as LG+G+I (Equilibrium frequencies: Model, Proportion of invariable sites: Estimated (0.092), Number of substitution rate categories: 4, Gamma shape parameter: Estimated (0.709). Bg: Biomphalaria glabrata , Cg: Crassostrea gigas , d: Drosophila melanogaster , h: Homo sapiens , Hm: Hymenolepis microstoma , Lg: Lottia gigantean , Px: Protopolystoma xenopodis , Sm: Schistosoma mansoni . Red highlighted NRs show H . microstoma NRs. (TIF)

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