Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails

Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (h...

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Bibliographic Details
Main Authors: Deborah Wall-Palmer, Lisette Mekkes, Paula Ramos-Silva, Linda K. Dämmer, Erica Goetze, Karel Bakker, Elza Duijm, Katja T. C. A. Peijnenburg
Format: Other Non-Article Part of Journal/Newspaper
Language:unknown
Published: 2021
Subjects:
Oceanography
Developmental Biology
Bioinformatics
atlantidae
ocean acidification
calcification
calcein indicator
gene expression
micro-CT
Ocean acidification
Online Access:https://doi.org/10.6084/m9.figshare.15048423.v2
https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423
Description
Summary:Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (here genes as defined by [61]). Giving overall good quality and 93.5% completeness, the A. ariejansseni transcriptome is suitable for differential expression analysis, and comparable to prior pteropod de novo transcriptomes [22,23].; Table S4. Transcriptome functional annotation of Atlanta ariejansseni using Trinotate: summary of the strategies and statistics.

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