In-depth characterization of denitrifier communities across different soil ecosystems in the tundra

BACKGROUND: In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N(2)O). However, the microorganisms involved in the cycling of N(2)O in this system remain largely uncharacterized. Since tundra soils...

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Bibliographic Details
Published in:Environmental Microbiome
Main Authors: Pessi, Igor S., Viitamäki, Sirja, Virkkala, Anna-Maria, Eronen-Rasimus, Eeva, Delmont, Tom O., Marushchak, Maija E., Luoto, Miska, Hultman, Jenni
Format: Text
Language:English
Published: BioMed Central 2022
Subjects:
Research Article
Northern Finland
Tundra
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9188126/
http://www.ncbi.nlm.nih.gov/pubmed/35690846
https://doi.org/10.1186/s40793-022-00424-2
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Summary:BACKGROUND: In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N(2)O). However, the microorganisms involved in the cycling of N(2)O in this system remain largely uncharacterized. Since tundra soils are variable sources and sinks of N(2)O, we aimed at investigating differences in community structure across different soil ecosystems in the tundra. RESULTS: We analysed 1.4 Tb of metagenomic data from soils in northern Finland covering a range of ecosystems from dry upland soils to water-logged fens and obtained 796 manually binned and curated metagenome-assembled genomes (MAGs). We then searched for MAGs harbouring genes involved in denitrification, an important process driving N(2)O emissions. Communities of potential denitrifiers were dominated by microorganisms with truncated denitrification pathways (i.e., lacking one or more denitrification genes) and differed across soil ecosystems. Upland soils showed a strong N(2)O sink potential and were dominated by members of the Alphaproteobacteria such as Bradyrhizobium and Reyranella. Fens, which had in general net-zero N(2)O fluxes, had a high abundance of poorly characterized taxa affiliated with the Chloroflexota lineage Ellin6529 and the Acidobacteriota subdivision Gp23. CONCLUSIONS: By coupling an in-depth characterization of microbial communities with in situ measurements of N(2)O fluxes, our results suggest that the observed spatial patterns of N(2)O fluxes in the tundra are related to differences in the composition of denitrifier communities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40793-022-00424-2.

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