Where did they not go? Considerations for generating pseudo-absences for telemetry-based habitat models
BACKGROUND: Habitat suitability models give insight into the ecological drivers of species distributions and are increasingly common in management and conservation planning. Telemetry data can be used in habitat models to describe where animals were present, however this requires the use of presence...
| Published in: | Movement Ecology |
|---|---|
| Main Authors: | , , , , , |
| Format: | Text |
| Language: | English |
| Published: |
BioMed Central
2021
|
| Subjects: | |
| Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7888118/ http://www.ncbi.nlm.nih.gov/pubmed/33596991 https://doi.org/10.1186/s40462-021-00240-2 |
| Summary: | BACKGROUND: Habitat suitability models give insight into the ecological drivers of species distributions and are increasingly common in management and conservation planning. Telemetry data can be used in habitat models to describe where animals were present, however this requires the use of presence-only modeling approaches or the generation of ‘pseudo-absences’ to simulate locations where animals did not go. To highlight considerations for generating pseudo-absences for telemetry-based habitat models, we explored how different methods of pseudo-absence generation affect model performance across species’ movement strategies, model types, and environments. METHODS: We built habitat models for marine and terrestrial case studies, Northeast Pacific blue whales (Balaenoptera musculus) and African elephants (Loxodonta africana). We tested four pseudo-absence generation methods commonly used in telemetry-based habitat models: (1) background sampling; (2) sampling within a buffer zone around presence locations; (3) correlated random walks beginning at the tag release location; (4) reverse correlated random walks beginning at the last tag location. Habitat models were built using generalised linear mixed models, generalised additive mixed models, and boosted regression trees. RESULTS: We found that the separation in environmental niche space between presences and pseudo-absences was the single most important driver of model explanatory power and predictive skill. This result was consistent across marine and terrestrial habitats, two species with vastly different movement syndromes, and three different model types. The best-performing pseudo-absence method depended on which created the greatest environmental separation: background sampling for blue whales and reverse correlated random walks for elephants. However, despite the fact that models with greater environmental separation performed better according to traditional predictive skill metrics, they did not always produce biologically realistic spatial predictions ... |
|---|