Environmental and physiological factors shape the gut microbiota of Atlantic salmon parr (Salmo salar L.)

•Atlantic salmon (Salmo salar) parr harbour a vast diversity of microbiota in their distal intestine digesta.•A core microbiota shared by all samples and accessory group core microbiotas were identified.•Both rearing groups showed distinct intestinal microbiota profiles, with unique group-specific m...

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Bibliographic Details
Published in:Aquaculture
Main Authors: Dehler, Carola E., Secombes, Christopher J., Martin, Samuel A.M.
Format: Text
Language:English
Published: Elsevier Pub. Co 2017
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5142738/
https://doi.org/10.1016/j.aquaculture.2016.07.017
Description
Summary:•Atlantic salmon (Salmo salar) parr harbour a vast diversity of microbiota in their distal intestine digesta.•A core microbiota shared by all samples and accessory group core microbiotas were identified.•Both rearing groups showed distinct intestinal microbiota profiles, with unique group-specific microbes.•Maintenance of intestinal microbiota is a complex process, dictated by both environmental factors and host physiology.