High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG...
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Michigan State University
2014
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ftpubmed:oai:pubmedcentral.nih.gov:4148980 2023-05-15T17:43:24+02:00 High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn 2014-03-01 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980 https://doi.org/10.4056/sigs.5038901 en eng Michigan State University http://www.ncbi.nlm.nih.gov/pmc/articles/PMC http://dx.doi.org/10.4056/sigs.5038901 Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. CC-BY Short Genome Reports Text 2014 ftpubmed https://doi.org/10.4056/sigs.5038901 2014-09-07T01:26:50Z Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting. Text Northern Norway PubMed Central (PMC) Norway Standards in Genomic Sciences 9 3 676 686 |
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English |
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Short Genome Reports |
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Short Genome Reports Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
topic_facet |
Short Genome Reports |
description |
Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting. |
format |
Text |
author |
Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn |
author_facet |
Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn |
author_sort |
Bjerga, Gro Elin Kjæreng |
title |
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
title_short |
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
title_full |
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
title_fullStr |
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
title_full_unstemmed |
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway |
title_sort |
high quality draft genome sequence of streptomyces sp. strain aw19m42 isolated from a sea squirt in northern norway |
publisher |
Michigan State University |
publishDate |
2014 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980 https://doi.org/10.4056/sigs.5038901 |
geographic |
Norway |
geographic_facet |
Norway |
genre |
Northern Norway |
genre_facet |
Northern Norway |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC http://dx.doi.org/10.4056/sigs.5038901 |
op_rights |
Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.4056/sigs.5038901 |
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Standards in Genomic Sciences |
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9 |
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3 |
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686 |
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1766145462805463040 |