High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway

Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG...

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Published in:Standards in Genomic Sciences
Main Authors: Bjerga, Gro Elin Kjæreng, Hjerde, Erik, De Santi, Concetta, Williamson, Adele Kim, Smalås, Arne Oskar, Willassen, Nils Peder, Altermark, Bjørn
Format: Text
Language:English
Published: Michigan State University 2014
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Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980
https://doi.org/10.4056/sigs.5038901
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spelling ftpubmed:oai:pubmedcentral.nih.gov:4148980 2023-05-15T17:43:24+02:00 High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn 2014-03-01 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980 https://doi.org/10.4056/sigs.5038901 en eng Michigan State University http://www.ncbi.nlm.nih.gov/pmc/articles/PMC http://dx.doi.org/10.4056/sigs.5038901 Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. CC-BY Short Genome Reports Text 2014 ftpubmed https://doi.org/10.4056/sigs.5038901 2014-09-07T01:26:50Z Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting. Text Northern Norway PubMed Central (PMC) Norway Standards in Genomic Sciences 9 3 676 686
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Short Genome Reports
spellingShingle Short Genome Reports
Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
topic_facet Short Genome Reports
description Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting.
format Text
author Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
author_facet Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
author_sort Bjerga, Gro Elin Kjæreng
title High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_short High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_full High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_fullStr High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_full_unstemmed High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_sort high quality draft genome sequence of streptomyces sp. strain aw19m42 isolated from a sea squirt in northern norway
publisher Michigan State University
publishDate 2014
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980
https://doi.org/10.4056/sigs.5038901
geographic Norway
geographic_facet Norway
genre Northern Norway
genre_facet Northern Norway
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC
http://dx.doi.org/10.4056/sigs.5038901
op_rights Copyright © retained by original authors
http://creativecommons.org/licenses/by/2.5/
This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
op_rightsnorm CC-BY
op_doi https://doi.org/10.4056/sigs.5038901
container_title Standards in Genomic Sciences
container_volume 9
container_issue 3
container_start_page 676
op_container_end_page 686
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