Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla

Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, p...

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Bibliographic Details
Main Authors: Oppong-Danquah, Ernest, Miranda, Martina, Blümel, Martina, Tasdemir, Deniz
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
A7-2020
A7-2020_417
Adduct ion
Annotation
Arni Fridriksson
Bacterial strain
Class
compound
Confidence level
Feature-based molecular networking according to Nothias et al. 2020
Fragment ion
molecular mass
Genus
unique identification
unique identification (Semantic URI)
unique identification (URI)
IESSNS_2020
Laboratory experiment
LC-MS/MS
Molecular formula
Multipurpose pelagic trawl - 832
MULTPELT-832
Nordic Seas
Parent ion
Peak area
Retention time
Sanger Sequencing modified after Sanger et al. (1977)
SUMMER
Sustainable Management of Mesopelagic Resources
Temperature
air
Treatment: culture medium
Type of study
Ultra-high-performance liquid chromatography (UHPLC)
Waters
Acquity UPLC I-Class System
coupled with quadrupole-time-of-flight mass spectrometer
Xevo G2-XS QToF
Uniform resource locator/link to reference
Arctic
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.959962
https://doi.org/10.1594/PANGAEA.959962
Description
Summary:Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, predicted molecular formula, fragmentation pattern and source of the hit. The source of the ion is indicated by the area under a peak (peak area count). Confidence level of annotation are given based on the reporting standards proposed by Sumner, et al. 2007, i.e. identified compound, is putative annotation without reference standards, is putative characterized compound class, and is unknown compound. The mass spectrometry data used for the molecular networking analysis were deposited in the MassIVE Public GNPS database under the accession number MSV000091067.

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