Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla
Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all dat...
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2023
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.959953 2024-09-15T18:20:30+00:00 Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz MEDIAN LATITUDE: 63.186583 * MEDIAN LONGITUDE: -18.894667 * SOUTH-BOUND LATITUDE: 63.157667 * WEST-BOUND LONGITUDE: -18.896500 * NORTH-BOUND LATITUDE: 63.215500 * EAST-BOUND LONGITUDE: -18.892833 * DATE/TIME START: 2020-07-15T14:46:00 * DATE/TIME END: 2020-07-15T15:47:00 * MINIMUM ELEVATION: -860.0 m * MAXIMUM ELEVATION: -800.0 m 2023 text/tab-separated-values, 720 data points https://doi.pangaea.de/10.1594/PANGAEA.959953 https://doi.org/10.1594/PANGAEA.959953 en eng PANGAEA https://doi.org/10.1594/PANGAEA.959939 Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129 https://doi.pangaea.de/10.1594/PANGAEA.959953 https://doi.org/10.1594/PANGAEA.959953 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess A7-2020 A7-2020_417 Accession number genetics Arni Fridriksson Bacterial strain Basic Local Alignment Search Tool National Center for Biotechnology Information Nucleotide BLAST blastn Gene name Identity IESSNS_2020 Laboratory experiment Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Sanger Sequencing modified after Sanger et al. (1977) Sequence length Source material Species unique identification unique identification (Semantic URI) unique identification (URI) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study VID Visual identification dataset 2023 ftpangaea https://doi.org/10.1594/PANGAEA.95995310.1594/PANGAEA.95993910.3390/md21020129 2024-07-24T02:31:43Z Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all database entries and the second against type strains only. Nucleotide identities (%) with database hits and NCBI accession numbers assigned to the isolated bacteria are also displayed. Colonies were cultured either in marine broth, Hastings medium or Wickerham medium for comparison. Dataset Nordic Seas PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-18.896500,-18.892833,63.215500,63.157667) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
A7-2020 A7-2020_417 Accession number genetics Arni Fridriksson Bacterial strain Basic Local Alignment Search Tool National Center for Biotechnology Information Nucleotide BLAST blastn Gene name Identity IESSNS_2020 Laboratory experiment Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Sanger Sequencing modified after Sanger et al. (1977) Sequence length Source material Species unique identification unique identification (Semantic URI) unique identification (URI) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study VID Visual identification |
spellingShingle |
A7-2020 A7-2020_417 Accession number genetics Arni Fridriksson Bacterial strain Basic Local Alignment Search Tool National Center for Biotechnology Information Nucleotide BLAST blastn Gene name Identity IESSNS_2020 Laboratory experiment Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Sanger Sequencing modified after Sanger et al. (1977) Sequence length Source material Species unique identification unique identification (Semantic URI) unique identification (URI) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study VID Visual identification Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
topic_facet |
A7-2020 A7-2020_417 Accession number genetics Arni Fridriksson Bacterial strain Basic Local Alignment Search Tool National Center for Biotechnology Information Nucleotide BLAST blastn Gene name Identity IESSNS_2020 Laboratory experiment Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Sanger Sequencing modified after Sanger et al. (1977) Sequence length Source material Species unique identification unique identification (Semantic URI) unique identification (URI) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study VID Visual identification |
description |
Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all database entries and the second against type strains only. Nucleotide identities (%) with database hits and NCBI accession numbers assigned to the isolated bacteria are also displayed. Colonies were cultured either in marine broth, Hastings medium or Wickerham medium for comparison. |
format |
Dataset |
author |
Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz |
author_facet |
Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz |
author_sort |
Oppong-Danquah, Ernest |
title |
Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_short |
Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_full |
Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_fullStr |
Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_full_unstemmed |
Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_sort |
identification of bacteria isolated from the mesopelagic jellyfish periphylla periphylla |
publisher |
PANGAEA |
publishDate |
2023 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.959953 https://doi.org/10.1594/PANGAEA.959953 |
op_coverage |
MEDIAN LATITUDE: 63.186583 * MEDIAN LONGITUDE: -18.894667 * SOUTH-BOUND LATITUDE: 63.157667 * WEST-BOUND LONGITUDE: -18.896500 * NORTH-BOUND LATITUDE: 63.215500 * EAST-BOUND LONGITUDE: -18.892833 * DATE/TIME START: 2020-07-15T14:46:00 * DATE/TIME END: 2020-07-15T15:47:00 * MINIMUM ELEVATION: -860.0 m * MAXIMUM ELEVATION: -800.0 m |
long_lat |
ENVELOPE(-18.896500,-18.892833,63.215500,63.157667) |
genre |
Nordic Seas |
genre_facet |
Nordic Seas |
op_relation |
https://doi.org/10.1594/PANGAEA.959939 Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129 https://doi.pangaea.de/10.1594/PANGAEA.959953 https://doi.org/10.1594/PANGAEA.959953 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.95995310.1594/PANGAEA.95993910.3390/md21020129 |
_version_ |
1810458880463863808 |