Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla

Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all dat...

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Bibliographic Details
Main Authors: Oppong-Danquah, Ernest, Miranda, Martina, Blümel, Martina, Tasdemir, Deniz
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
A7-2020
A7-2020_417
Accession number
genetics
Arni Fridriksson
Bacterial strain
Basic Local Alignment Search Tool
National Center for Biotechnology Information
Nucleotide BLAST
blastn
Gene name
Identity
IESSNS_2020
Laboratory experiment
Multipurpose pelagic trawl - 832
MULTPELT-832
Nordic Seas
Sanger Sequencing modified after Sanger et al. (1977)
Sequence length
Source material
Species
unique identification
unique identification (Semantic URI)
unique identification (URI)
SUMMER
Sustainable Management of Mesopelagic Resources
Temperature
air
Treatment: culture medium
Type of study
VID
Visual identification
Hastings
Irminger Sea
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.959953
https://doi.org/10.1594/PANGAEA.959953
Description
Summary:Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all database entries and the second against type strains only. Nucleotide identities (%) with database hits and NCBI accession numbers assigned to the isolated bacteria are also displayed. Colonies were cultured either in marine broth, Hastings medium or Wickerham medium for comparison.

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