List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra
Eight consistently amplifying markers were used for Cetraria aculeata. Samples of Usnea aurantiacoatra and U. antarctica were genotyped using 21 and 22 microsatellites markers, respectively. Detailed information on primers and PCR amplification can be found in Lutsak et al. (2016) and Lagostina et a...
Main Author: | |
---|---|
Format: | Dataset |
Language: | English |
Published: |
PANGAEA
2019
|
Subjects: | |
Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.906884 https://doi.org/10.1594/PANGAEA.906884 |
id |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.906884 |
---|---|
record_format |
openpolar |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.906884 2023-05-15T14:04:57+02:00 List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra Lagostina, Elisa MEDIAN LATITUDE: -58.785385 * MEDIAN LONGITUDE: -62.503056 * SOUTH-BOUND LATITUDE: -64.095010 * WEST-BOUND LONGITUDE: -73.256700 * NORTH-BOUND LATITUDE: -50.635833 * EAST-BOUND LONGITUDE: -55.359680 * DATE/TIME START: 2002-02-01T00:00:00 * DATE/TIME END: 2018-03-08T00:00:00 2019-09-27 application/zip, 3 datasets https://doi.pangaea.de/10.1594/PANGAEA.906884 https://doi.org/10.1594/PANGAEA.906884 en eng PANGAEA https://doi.pangaea.de/10.1594/PANGAEA.906884 https://doi.org/10.1594/PANGAEA.906884 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Supplement to: Lagostina, Elisa; Dal Grande, Francesco; Scur, M; Lorenz, Andrea; Andreev, M; Ruprecht, U; Søchting, U; Sancho, L G; Wirtz, Nora; Rozzi, R; Printzen, Christian (in prep.): Genetic structure and gene flow of three lichens forming fungi in the Maritime Antarctic and southern South America. Journal of Biogeography Biodiversity Cetraria aculeata climate change Conservation microsatellites MigrateN Parmeliaceae Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 Usnea antarctica Usnea aurantiacoatra Dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.906884 2023-01-20T07:34:25Z Eight consistently amplifying markers were used for Cetraria aculeata. Samples of Usnea aurantiacoatra and U. antarctica were genotyped using 21 and 22 microsatellites markers, respectively. Detailed information on primers and PCR amplification can be found in Lutsak et al. (2016) and Lagostina et al. (2017). PCR amplicons were electrophoresed using an Applied Biosystems 3730 sequencer, with the LIZ 500 (C. aculeata)or LIZ 600 (Usnea sp.) size standards (Applied Biosystems, Waltham, Mass., USA). Allele sizes were manually scored using the Geneious 10 microsatellites tool (Kearse et al. 2012). Those SSR markers were used to study the effects of dispersal strategy and phylogeographic history on the population genetic structure of Antarctic lichens. Dataset Antarc* Antarctic Antarctica Arctic Climate change Sea ice Usnea antarctica PANGAEA - Data Publisher for Earth & Environmental Science Antarctic Arctic ENVELOPE(-73.256700,-55.359680,-50.635833,-64.095010) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Biodiversity Cetraria aculeata climate change Conservation microsatellites MigrateN Parmeliaceae Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 Usnea antarctica Usnea aurantiacoatra |
spellingShingle |
Biodiversity Cetraria aculeata climate change Conservation microsatellites MigrateN Parmeliaceae Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 Usnea antarctica Usnea aurantiacoatra Lagostina, Elisa List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
topic_facet |
Biodiversity Cetraria aculeata climate change Conservation microsatellites MigrateN Parmeliaceae Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 Usnea antarctica Usnea aurantiacoatra |
description |
Eight consistently amplifying markers were used for Cetraria aculeata. Samples of Usnea aurantiacoatra and U. antarctica were genotyped using 21 and 22 microsatellites markers, respectively. Detailed information on primers and PCR amplification can be found in Lutsak et al. (2016) and Lagostina et al. (2017). PCR amplicons were electrophoresed using an Applied Biosystems 3730 sequencer, with the LIZ 500 (C. aculeata)or LIZ 600 (Usnea sp.) size standards (Applied Biosystems, Waltham, Mass., USA). Allele sizes were manually scored using the Geneious 10 microsatellites tool (Kearse et al. 2012). Those SSR markers were used to study the effects of dispersal strategy and phylogeographic history on the population genetic structure of Antarctic lichens. |
format |
Dataset |
author |
Lagostina, Elisa |
author_facet |
Lagostina, Elisa |
author_sort |
Lagostina, Elisa |
title |
List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
title_short |
List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
title_full |
List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
title_fullStr |
List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
title_full_unstemmed |
List of number of microsatellite repeats for fungus specific locus in stands of Cetraria aculeata, Usnea antarctica and U. aurantiacoatra |
title_sort |
list of number of microsatellite repeats for fungus specific locus in stands of cetraria aculeata, usnea antarctica and u. aurantiacoatra |
publisher |
PANGAEA |
publishDate |
2019 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.906884 https://doi.org/10.1594/PANGAEA.906884 |
op_coverage |
MEDIAN LATITUDE: -58.785385 * MEDIAN LONGITUDE: -62.503056 * SOUTH-BOUND LATITUDE: -64.095010 * WEST-BOUND LONGITUDE: -73.256700 * NORTH-BOUND LATITUDE: -50.635833 * EAST-BOUND LONGITUDE: -55.359680 * DATE/TIME START: 2002-02-01T00:00:00 * DATE/TIME END: 2018-03-08T00:00:00 |
long_lat |
ENVELOPE(-73.256700,-55.359680,-50.635833,-64.095010) |
geographic |
Antarctic Arctic |
geographic_facet |
Antarctic Arctic |
genre |
Antarc* Antarctic Antarctica Arctic Climate change Sea ice Usnea antarctica |
genre_facet |
Antarc* Antarctic Antarctica Arctic Climate change Sea ice Usnea antarctica |
op_source |
Supplement to: Lagostina, Elisa; Dal Grande, Francesco; Scur, M; Lorenz, Andrea; Andreev, M; Ruprecht, U; Søchting, U; Sancho, L G; Wirtz, Nora; Rozzi, R; Printzen, Christian (in prep.): Genetic structure and gene flow of three lichens forming fungi in the Maritime Antarctic and southern South America. Journal of Biogeography |
op_relation |
https://doi.pangaea.de/10.1594/PANGAEA.906884 https://doi.org/10.1594/PANGAEA.906884 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.906884 |
_version_ |
1766276414983634944 |