CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85

• Main Authors: Pala, Claudia, Bienhold, Christina, Boetius, Antje, Salman-Carvalho, Verena
• Format: Dataset
• Language: English
• Published: PANGAEA 2019
• Subjects: Actinobacteria; targeted with HGC236 oligonucleotides FISH-probe; Actinomarinales; targeted with OM1-952 and OM1-389 oligonucleotides FISH-probe; Alphaproteobacteria; targeted with ALF968 oligonucleotides FISH-probe; Archaea; targed with ARCH915 oligonucleotide FISH-probe; ARK-XXVIII/2; Bacteria; targed with EUB338(I-III) oligonucleotide FISH-probe; Bacteroidetes; targeted with CF968 oligonucleotides FISH-probe; CARD-FISH; Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH); cell counts; Chloroflexi; targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe; Colwellia and Alteromonas; targeted with ALT1413 oligonucleiotide FISH-Probe; Cytophagales; targeted with CF319b oligonucleotides FISH-probe; Date/Time of event; Deltaproteobacteria; targeted with the DELTA495 mix oligonucleotide FISH-probes; Depth; bottom/max; sediment/rock; top/min; Elevation of event; Event label; Flavobacteriales; targeted with CFB563 oligonucleotides FISH-probe; Fluorescence determination of DAPI stain; Gammaproteobacteria; targeted with Gam42a oligonucleotide FISH-probe; Hausgarten; HGI; HGIV; HGIX; HGVI; JTB255; targeted with JTB819a; JTB819b and JTB897 oligonucleotide FISH-probe; Latitude of event; Longitude of event; Method/Device of event; Microbial abundance; Fram Strait
• Online Access: https://doi.pangaea.de/10.1594/PANGAEA.905210

We quantified Bacteria and Archaea, as well as 15 bacterial groups at various taxonomic ranks using catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH) in HAUSGARTEN surface sediments at stations HGI, HGIV, HGVI, and HGIX.