CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait

We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 o...

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Bibliographic Details
Main Author: Salman-Carvalho, Verena
Format: Dataset
Language:English
Published: PANGAEA 2019
Subjects:
ABYSS
ARK-XXVIII/2
Assessment of bacterial life and matter cycling in deep-sea surface sediments
Bacteria
targed with EUB338(I-III) oligonucleotide FISH-probe
CARD-FISH
Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
cell counts
Chloroflexi
targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe
CTD/Rosette
CTD-RO
Date/Time of event
Depth
bottom/max
sediment/rock
top/min
water
EGI
Elevation of event
Event label
Fluorescence determination of DAPI stain
Hausgarten
HGIV
Latitude of event
Longitude of event
Method/Device of event
Microbial abundance
cells
Multicorer with television
N4
North Greenland Sea
Optional event label
Polarstern
PS85
PS85/436-1
PS85/456-1
PS85/460-1
PS85/460-4
PS85/473-1
PS85/473-6
PS85/473-7
Sample material
SAR202 clade
targeted with SAR202-312R oligonucleotide FISH-probe
TVMUC
Greenland
Fram Strait
Greenland Sea
North Greenland
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.903569
https://doi.org/10.1594/PANGAEA.903569
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.903569
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic ABYSS
ARK-XXVIII/2
Assessment of bacterial life and matter cycling in deep-sea surface sediments
Bacteria
targed with EUB338(I-III) oligonucleotide FISH-probe
CARD-FISH
Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
cell counts
Chloroflexi
targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe
CTD/Rosette
CTD-RO
Date/Time of event
Depth
bottom/max
sediment/rock
top/min
water
EGI
Elevation of event
Event label
Fluorescence determination of DAPI stain
Hausgarten
HGIV
Latitude of event
Longitude of event
Method/Device of event
Microbial abundance
cells
Multicorer with television
N4
North Greenland Sea
Optional event label
Polarstern
PS85
PS85/436-1
PS85/456-1
PS85/460-1
PS85/460-4
PS85/473-1
PS85/473-6
PS85/473-7
Sample material
SAR202 clade
targeted with SAR202-312R oligonucleotide FISH-probe
TVMUC
spellingShingle ABYSS
ARK-XXVIII/2
Assessment of bacterial life and matter cycling in deep-sea surface sediments
Bacteria
targed with EUB338(I-III) oligonucleotide FISH-probe
CARD-FISH
Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
cell counts
Chloroflexi
targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe
CTD/Rosette
CTD-RO
Date/Time of event
Depth
bottom/max
sediment/rock
top/min
water
EGI
Elevation of event
Event label
Fluorescence determination of DAPI stain
Hausgarten
HGIV
Latitude of event
Longitude of event
Method/Device of event
Microbial abundance
cells
Multicorer with television
N4
North Greenland Sea
Optional event label
Polarstern
PS85
PS85/436-1
PS85/456-1
PS85/460-1
PS85/460-4
PS85/473-1
PS85/473-6
PS85/473-7
Sample material
SAR202 clade
targeted with SAR202-312R oligonucleotide FISH-probe
TVMUC
Salman-Carvalho, Verena
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
topic_facet ABYSS
ARK-XXVIII/2
Assessment of bacterial life and matter cycling in deep-sea surface sediments
Bacteria
targed with EUB338(I-III) oligonucleotide FISH-probe
CARD-FISH
Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
cell counts
Chloroflexi
targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe
CTD/Rosette
CTD-RO
Date/Time of event
Depth
bottom/max
sediment/rock
top/min
water
EGI
Elevation of event
Event label
Fluorescence determination of DAPI stain
Hausgarten
HGIV
Latitude of event
Longitude of event
Method/Device of event
Microbial abundance
cells
Multicorer with television
N4
North Greenland Sea
Optional event label
Polarstern
PS85
PS85/436-1
PS85/456-1
PS85/460-1
PS85/460-4
PS85/473-1
PS85/473-6
PS85/473-7
Sample material
SAR202 clade
targeted with SAR202-312R oligonucleotide FISH-probe
TVMUC
description We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 of the long-term ecological research observatory HAUSGARTEN in the Fram Strait.
format Dataset
author Salman-Carvalho, Verena
author_facet Salman-Carvalho, Verena
author_sort Salman-Carvalho, Verena
title CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
title_short CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
title_full CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
title_fullStr CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
title_full_unstemmed CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
title_sort card-fish counts of the water column and sediment at hausgarten, fram strait
publisher PANGAEA
publishDate 2019
url https://doi.pangaea.de/10.1594/PANGAEA.903569
https://doi.org/10.1594/PANGAEA.903569
op_coverage MEDIAN LATITUDE: 79.340760 * MEDIAN LONGITUDE: 2.919263 * SOUTH-BOUND LATITUDE: 78.973330 * WEST-BOUND LONGITUDE: -5.290500 * NORTH-BOUND LATITUDE: 79.760330 * EAST-BOUND LONGITUDE: 4.386000 * DATE/TIME START: 2014-06-17T14:30:00 * DATE/TIME END: 2014-06-25T16:59:00 * MINIMUM ELEVATION: -2566.3 m * MAXIMUM ELEVATION: -1056.3 m
long_lat ENVELOPE(-5.290500,4.386000,79.760330,78.973330)
geographic Greenland
geographic_facet Greenland
genre Fram Strait
Greenland
Greenland Sea
North Greenland
genre_facet Fram Strait
Greenland
Greenland Sea
North Greenland
op_relation Cardozo-Mino, Magda Guadalupe; Salman-Carvalho, Verena; Boetius, Antje; Fadeev, Eduard (2019): CARD-FISH cell counts of taxonomic bacterial and archaeal groups in Fram Strait during PS99.2. PANGAEA, https://doi.org/10.1594/PANGAEA.905212
Engel, Anja; Piontek, Judith (2018): Bacterial data from CTD stations during POLARSTERN cruise PS85 (ARK-XXVIII/2). PANGAEA, https://doi.org/10.1594/PANGAEA.887881
Graeve, Martin; Ludwichowski, Kai-Uwe (2017): Inorganic nutrients measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute for Polar and Marine Research, Bremerhaven (1986-2013), PANGAEA, https://doi.org/10.1594/PANGAEA.882217
Nöthig, Eva-Maria; Winkler, Maria; Bonk, Elizabeth (2018): Chlorophyll a measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.887840
Pala, Claudia; Bienhold, Christina; Boetius, Antje; Salman-Carvalho, Verena (2019): CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.905210
Rabe, Benjamin; von Appen, Wilken-Jon; Latarius, Katrin; Wisotzki, Andreas (2014): Physical oceanography measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.837427
Oligonucleotide probes and formamide concentration of the water column and sediment at HAUSGARTEN (URI: https://store.pangaea.de/Publications/Salman-Carvalho-2019/Oligonucleotide-probes_Salman-Carvalho_2019.pdf)
https://doi.pangaea.de/10.1594/PANGAEA.903569
https://doi.org/10.1594/PANGAEA.903569
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/PANGAEA.903569
https://doi.org/10.1594/PANGAEA.905212
https://doi.org/10.1594/PANGAEA.887881
https://doi.org/10.1594/PANGAEA.882217
https://doi.org/10.1594/PANGAEA.887840
https://doi.org/10.1594/PANGAEA.837427
_version_ 1766004195776790528
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.903569 2023-05-15T16:18:05+02:00 CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait Salman-Carvalho, Verena MEDIAN LATITUDE: 79.340760 * MEDIAN LONGITUDE: 2.919263 * SOUTH-BOUND LATITUDE: 78.973330 * WEST-BOUND LONGITUDE: -5.290500 * NORTH-BOUND LATITUDE: 79.760330 * EAST-BOUND LONGITUDE: 4.386000 * DATE/TIME START: 2014-06-17T14:30:00 * DATE/TIME END: 2014-06-25T16:59:00 * MINIMUM ELEVATION: -2566.3 m * MAXIMUM ELEVATION: -1056.3 m 2019-07-05 text/tab-separated-values, 77 data points https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 en eng PANGAEA Cardozo-Mino, Magda Guadalupe; Salman-Carvalho, Verena; Boetius, Antje; Fadeev, Eduard (2019): CARD-FISH cell counts of taxonomic bacterial and archaeal groups in Fram Strait during PS99.2. PANGAEA, https://doi.org/10.1594/PANGAEA.905212 Engel, Anja; Piontek, Judith (2018): Bacterial data from CTD stations during POLARSTERN cruise PS85 (ARK-XXVIII/2). PANGAEA, https://doi.org/10.1594/PANGAEA.887881 Graeve, Martin; Ludwichowski, Kai-Uwe (2017): Inorganic nutrients measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute for Polar and Marine Research, Bremerhaven (1986-2013), PANGAEA, https://doi.org/10.1594/PANGAEA.882217 Nöthig, Eva-Maria; Winkler, Maria; Bonk, Elizabeth (2018): Chlorophyll a measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.887840 Pala, Claudia; Bienhold, Christina; Boetius, Antje; Salman-Carvalho, Verena (2019): CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.905210 Rabe, Benjamin; von Appen, Wilken-Jon; Latarius, Katrin; Wisotzki, Andreas (2014): Physical oceanography measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.837427 Oligonucleotide probes and formamide concentration of the water column and sediment at HAUSGARTEN (URI: https://store.pangaea.de/Publications/Salman-Carvalho-2019/Oligonucleotide-probes_Salman-Carvalho_2019.pdf) https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY ABYSS ARK-XXVIII/2 Assessment of bacterial life and matter cycling in deep-sea surface sediments Bacteria targed with EUB338(I-III) oligonucleotide FISH-probe CARD-FISH Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) cell counts Chloroflexi targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe CTD/Rosette CTD-RO Date/Time of event Depth bottom/max sediment/rock top/min water EGI Elevation of event Event label Fluorescence determination of DAPI stain Hausgarten HGIV Latitude of event Longitude of event Method/Device of event Microbial abundance cells Multicorer with television N4 North Greenland Sea Optional event label Polarstern PS85 PS85/436-1 PS85/456-1 PS85/460-1 PS85/460-4 PS85/473-1 PS85/473-6 PS85/473-7 Sample material SAR202 clade targeted with SAR202-312R oligonucleotide FISH-probe TVMUC Dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.905212 https://doi.org/10.1594/PANGAEA.887881 https://doi.org/10.1594/PANGAEA.882217 https://doi.org/10.1594/PANGAEA.887840 https://doi.org/10.1594/PANGAEA.837427 2023-01-20T09:12:32Z We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 of the long-term ecological research observatory HAUSGARTEN in the Fram Strait. Dataset Fram Strait Greenland Greenland Sea North Greenland PANGAEA - Data Publisher for Earth & Environmental Science Greenland ENVELOPE(-5.290500,4.386000,79.760330,78.973330)

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