CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait
We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 o...
Main Author: | |
---|---|
Format: | Dataset |
Language: | English |
Published: |
PANGAEA
2019
|
Subjects: | |
Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 |
id |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.903569 |
---|---|
record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
ABYSS ARK-XXVIII/2 Assessment of bacterial life and matter cycling in deep-sea surface sediments Bacteria targed with EUB338(I-III) oligonucleotide FISH-probe CARD-FISH Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) cell counts Chloroflexi targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe CTD/Rosette CTD-RO Date/Time of event Depth bottom/max sediment/rock top/min water EGI Elevation of event Event label Fluorescence determination of DAPI stain Hausgarten HGIV Latitude of event Longitude of event Method/Device of event Microbial abundance cells Multicorer with television N4 North Greenland Sea Optional event label Polarstern PS85 PS85/436-1 PS85/456-1 PS85/460-1 PS85/460-4 PS85/473-1 PS85/473-6 PS85/473-7 Sample material SAR202 clade targeted with SAR202-312R oligonucleotide FISH-probe TVMUC |
spellingShingle |
ABYSS ARK-XXVIII/2 Assessment of bacterial life and matter cycling in deep-sea surface sediments Bacteria targed with EUB338(I-III) oligonucleotide FISH-probe CARD-FISH Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) cell counts Chloroflexi targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe CTD/Rosette CTD-RO Date/Time of event Depth bottom/max sediment/rock top/min water EGI Elevation of event Event label Fluorescence determination of DAPI stain Hausgarten HGIV Latitude of event Longitude of event Method/Device of event Microbial abundance cells Multicorer with television N4 North Greenland Sea Optional event label Polarstern PS85 PS85/436-1 PS85/456-1 PS85/460-1 PS85/460-4 PS85/473-1 PS85/473-6 PS85/473-7 Sample material SAR202 clade targeted with SAR202-312R oligonucleotide FISH-probe TVMUC Salman-Carvalho, Verena CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
topic_facet |
ABYSS ARK-XXVIII/2 Assessment of bacterial life and matter cycling in deep-sea surface sediments Bacteria targed with EUB338(I-III) oligonucleotide FISH-probe CARD-FISH Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) cell counts Chloroflexi targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe CTD/Rosette CTD-RO Date/Time of event Depth bottom/max sediment/rock top/min water EGI Elevation of event Event label Fluorescence determination of DAPI stain Hausgarten HGIV Latitude of event Longitude of event Method/Device of event Microbial abundance cells Multicorer with television N4 North Greenland Sea Optional event label Polarstern PS85 PS85/436-1 PS85/456-1 PS85/460-1 PS85/460-4 PS85/473-1 PS85/473-6 PS85/473-7 Sample material SAR202 clade targeted with SAR202-312R oligonucleotide FISH-probe TVMUC |
description |
We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 of the long-term ecological research observatory HAUSGARTEN in the Fram Strait. |
format |
Dataset |
author |
Salman-Carvalho, Verena |
author_facet |
Salman-Carvalho, Verena |
author_sort |
Salman-Carvalho, Verena |
title |
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
title_short |
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
title_full |
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
title_fullStr |
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
title_full_unstemmed |
CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait |
title_sort |
card-fish counts of the water column and sediment at hausgarten, fram strait |
publisher |
PANGAEA |
publishDate |
2019 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 |
op_coverage |
MEDIAN LATITUDE: 79.340760 * MEDIAN LONGITUDE: 2.919263 * SOUTH-BOUND LATITUDE: 78.973330 * WEST-BOUND LONGITUDE: -5.290500 * NORTH-BOUND LATITUDE: 79.760330 * EAST-BOUND LONGITUDE: 4.386000 * DATE/TIME START: 2014-06-17T14:30:00 * DATE/TIME END: 2014-06-25T16:59:00 * MINIMUM ELEVATION: -2566.3 m * MAXIMUM ELEVATION: -1056.3 m |
long_lat |
ENVELOPE(-5.290500,4.386000,79.760330,78.973330) |
geographic |
Greenland |
geographic_facet |
Greenland |
genre |
Fram Strait Greenland Greenland Sea North Greenland |
genre_facet |
Fram Strait Greenland Greenland Sea North Greenland |
op_relation |
Cardozo-Mino, Magda Guadalupe; Salman-Carvalho, Verena; Boetius, Antje; Fadeev, Eduard (2019): CARD-FISH cell counts of taxonomic bacterial and archaeal groups in Fram Strait during PS99.2. PANGAEA, https://doi.org/10.1594/PANGAEA.905212 Engel, Anja; Piontek, Judith (2018): Bacterial data from CTD stations during POLARSTERN cruise PS85 (ARK-XXVIII/2). PANGAEA, https://doi.org/10.1594/PANGAEA.887881 Graeve, Martin; Ludwichowski, Kai-Uwe (2017): Inorganic nutrients measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute for Polar and Marine Research, Bremerhaven (1986-2013), PANGAEA, https://doi.org/10.1594/PANGAEA.882217 Nöthig, Eva-Maria; Winkler, Maria; Bonk, Elizabeth (2018): Chlorophyll a measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.887840 Pala, Claudia; Bienhold, Christina; Boetius, Antje; Salman-Carvalho, Verena (2019): CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.905210 Rabe, Benjamin; von Appen, Wilken-Jon; Latarius, Katrin; Wisotzki, Andreas (2014): Physical oceanography measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.837427 Oligonucleotide probes and formamide concentration of the water column and sediment at HAUSGARTEN (URI: https://store.pangaea.de/Publications/Salman-Carvalho-2019/Oligonucleotide-probes_Salman-Carvalho_2019.pdf) https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.905212 https://doi.org/10.1594/PANGAEA.887881 https://doi.org/10.1594/PANGAEA.882217 https://doi.org/10.1594/PANGAEA.887840 https://doi.org/10.1594/PANGAEA.837427 |
_version_ |
1766004195776790528 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.903569 2023-05-15T16:18:05+02:00 CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait Salman-Carvalho, Verena MEDIAN LATITUDE: 79.340760 * MEDIAN LONGITUDE: 2.919263 * SOUTH-BOUND LATITUDE: 78.973330 * WEST-BOUND LONGITUDE: -5.290500 * NORTH-BOUND LATITUDE: 79.760330 * EAST-BOUND LONGITUDE: 4.386000 * DATE/TIME START: 2014-06-17T14:30:00 * DATE/TIME END: 2014-06-25T16:59:00 * MINIMUM ELEVATION: -2566.3 m * MAXIMUM ELEVATION: -1056.3 m 2019-07-05 text/tab-separated-values, 77 data points https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 en eng PANGAEA Cardozo-Mino, Magda Guadalupe; Salman-Carvalho, Verena; Boetius, Antje; Fadeev, Eduard (2019): CARD-FISH cell counts of taxonomic bacterial and archaeal groups in Fram Strait during PS99.2. PANGAEA, https://doi.org/10.1594/PANGAEA.905212 Engel, Anja; Piontek, Judith (2018): Bacterial data from CTD stations during POLARSTERN cruise PS85 (ARK-XXVIII/2). PANGAEA, https://doi.org/10.1594/PANGAEA.887881 Graeve, Martin; Ludwichowski, Kai-Uwe (2017): Inorganic nutrients measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute for Polar and Marine Research, Bremerhaven (1986-2013), PANGAEA, https://doi.org/10.1594/PANGAEA.882217 Nöthig, Eva-Maria; Winkler, Maria; Bonk, Elizabeth (2018): Chlorophyll a measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.887840 Pala, Claudia; Bienhold, Christina; Boetius, Antje; Salman-Carvalho, Verena (2019): CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.905210 Rabe, Benjamin; von Appen, Wilken-Jon; Latarius, Katrin; Wisotzki, Andreas (2014): Physical oceanography measured on water bottle samples during POLARSTERN cruise PS85 (ARK-XXVIII/2). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.837427 Oligonucleotide probes and formamide concentration of the water column and sediment at HAUSGARTEN (URI: https://store.pangaea.de/Publications/Salman-Carvalho-2019/Oligonucleotide-probes_Salman-Carvalho_2019.pdf) https://doi.pangaea.de/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.903569 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY ABYSS ARK-XXVIII/2 Assessment of bacterial life and matter cycling in deep-sea surface sediments Bacteria targed with EUB338(I-III) oligonucleotide FISH-probe CARD-FISH Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) cell counts Chloroflexi targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe CTD/Rosette CTD-RO Date/Time of event Depth bottom/max sediment/rock top/min water EGI Elevation of event Event label Fluorescence determination of DAPI stain Hausgarten HGIV Latitude of event Longitude of event Method/Device of event Microbial abundance cells Multicorer with television N4 North Greenland Sea Optional event label Polarstern PS85 PS85/436-1 PS85/456-1 PS85/460-1 PS85/460-4 PS85/473-1 PS85/473-6 PS85/473-7 Sample material SAR202 clade targeted with SAR202-312R oligonucleotide FISH-probe TVMUC Dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.903569 https://doi.org/10.1594/PANGAEA.905212 https://doi.org/10.1594/PANGAEA.887881 https://doi.org/10.1594/PANGAEA.882217 https://doi.org/10.1594/PANGAEA.887840 https://doi.org/10.1594/PANGAEA.837427 2023-01-20T09:12:32Z We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 of the long-term ecological research observatory HAUSGARTEN in the Fram Strait. Dataset Fram Strait Greenland Greenland Sea North Greenland PANGAEA - Data Publisher for Earth & Environmental Science Greenland ENVELOPE(-5.290500,4.386000,79.760330,78.973330) |