CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait

We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 o...

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Bibliographic Details
Main Author: Salman-Carvalho, Verena
Format: Dataset
Language:English
Published: PANGAEA 2019
Subjects:
ABYSS
ARK-XXVIII/2
Assessment of bacterial life and matter cycling in deep-sea surface sediments
Bacteria
targed with EUB338(I-III) oligonucleotide FISH-probe
CARD-FISH
Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
cell counts
Chloroflexi
targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe
CTD/Rosette
CTD-RO
Date/Time of event
Depth
bottom/max
sediment/rock
top/min
water
EGI
Elevation of event
Event label
Fluorescence determination of DAPI stain
Hausgarten
HGIV
Latitude of event
Longitude of event
Method/Device of event
Microbial abundance
cells
Multicorer with television
N4
North Greenland Sea
Optional event label
Polarstern
PS85
PS85/436-1
PS85/456-1
PS85/460-1
PS85/460-4
PS85/473-1
PS85/473-6
PS85/473-7
Sample material
SAR202 clade
targeted with SAR202-312R oligonucleotide FISH-probe
TVMUC
Greenland
Fram Strait
Greenland Sea
North Greenland
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.903569
https://doi.org/10.1594/PANGAEA.903569
Description
Summary:We determined the concentrations of different types of bacteria via Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) at different depths of the water column as well as several centimeters of the surficial deep-sea sediment. Sampling sites were stations HGIV, EGI, and N4 of the long-term ecological research observatory HAUSGARTEN in the Fram Strait.

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