Atlantic cod (Gadus morhua) assessment approaches in the North and Baltic Sea: A comparison of environmental DNA analysis versus bottom trawl sampling

The assessment of fish stocks is often dependent on scientific trawl fisheries surveys, which are both invasive and costly. The analysis of environmental DNA (eDNA) from water samples is regarded as a non-invasive and cost-effective alternative, but meaningful performance evaluations are required fo...

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Bibliographic Details
Published in:Frontiers in Marine Science
Main Authors: Kasmi, Yassine, Blancke, Tina, Eschbach, Erik, Möckel, Benita, Casas, Laura, Bernreuther, Matthias, Nogueira, Pedro, Delfs, Gertrud, Kadhim, Samira, Meißner, Timo, Rödiger, Marcellus, Eladdadi, Amina, Stransky, Christoph, Hanel, Reinhold
Format: Article in Journal/Newspaper
Language:English
Published: Frontiers Media SA 2023
Subjects:
article
Text
ddc:590
Environmental DNA (eDNA) > quantitative eDNA analysis > bottom trawl sampling > Gadus morhua > North Sea > Baltic Sea > eDNA modeling
atlantic cod
Gadus morhua
Online Access:https://doi.org/10.3389/fmars.2023.1058354
https://www.openagrar.de/receive/openagrar_mods_00086402
https://www.openagrar.de/servlets/MCRFileNodeServlet/openagrar_derivate_00052327/dn066177.pdf
https://www.frontiersin.org/articles/10.3389/fmars.2023.1058354/pdf
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Summary:The assessment of fish stocks is often dependent on scientific trawl fisheries surveys, which are both invasive and costly. The analysis of environmental DNA (eDNA) from water samples is regarded as a non-invasive and cost-effective alternative, but meaningful performance evaluations are required for a wider application. The goal of this study was to comparatively analyze a newly developed, more sensitive real-time PCR based eDNA approach with bottom trawl fisheries catches to locally detect and quantify Atlantic cod (Gadus morhua) in the North and Baltic Seas. With a species-specificity of the qPCR assay of 100%, a minimal limit of 15 Cytochrome b eDNA copies was determined for the detection of cod. In addition, a Gaussian processing regression proved a significant correlation (95%) between eDNA (copies per L of water) and cod biomass (CPUE/Ha) found by bottom trawling. The results presented here prove the potential of eDNA analyses for quantitative assessments of commercial fish stocks in the open ocean, although additional comparative analyses are needed to demonstrate its performance under different oceanographic conditions.

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