| Summary: | Morphometry underpins the basic knowledge of any organism's population demographics and dynamics. Such understanding enables the investigation of trends with important conservation implications including monitoring the health of individuals and changes in population dynamics over time. By detecting declines in health prior to the onset of significant mortality, monitoring of body condition can potentially allow time for a management response to avert population decline. We trialed the use of a diver‐operated stereo‐video (SDOV) system for making morphometric measurements of dwarf minke whales (Balaenoptera acutorostrata subsp.), a small oceanic rorqual, in the Great Barrier Reef, Australia. The SDOV system produced 68% more precise replicate total body length measurements than a single‐camera system, while both systems achieved a mean error below 0.5%. The increased precision offered by a SDOV system is desirable for longitudinal monitoring of growth rates and body condition. Optimal application of this method relied on adherence to protocols for both data collection and analysis beyond those dictated by the equipment user manuals. We provide recommendations for these field and analytical protocols, which may be suitable for use with other cetaceans when in‐water access is available.
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