All Fish catch data at the SAFE project 2011-2017.

• Main Author: Wilkinson, C
• Format: Dataset
• Language: unknown
• Published: 2018
• Subjects: Freshwater fish; land use change; biodiversity; oil palm; logged forest; Chini; Gemini; Anguilla anguilla
• Online Access: http://hdl.handle.net/10044/1/66071; https://doi.org/10.5281/zenodo.1478526

Description: All fish catch data of all methods across all streams sampled at the SAFE project, Danum Valley and surrounding oil palm areas. Please note this is the raw dataset and may contain errors that need correcting/editing. I have tried to correct the majority of errors, but all were corrected in seperate files prior to analysis, so please see specific datasets in relation to specific papers already published. All changes are detailed in the notes column or listed here if more general. All Rasbora caught in 2013 are labelled as cf. sumatrana as they were not differentiated from R. hubbsi. All Systomus changed to Barbodes. All Tor labelled as T. tambra, with no differentiation between tambra and tambroides. Project: This dataset was collected as part of the following SAFE research project: Composition and abundance of tropical freshwater vertebrate communities across a land use gradient XML metadata: GEMINI compliant metadata for this dataset is available here Files: This consists of 1 file: ClareW_RawDataFish.xlsx ClareW_RawDataFish.xlsx This file contains dataset metadata and 2 data tables: Fish catch data (described in worksheet Data) Description: Fish catch data Number of fields: 17 Number of data rows: 16022 Fields: Date: Date that stream was sampled (Field type: Date) Stream.: Which stream was sampled (Field type: Location) RA.: Which research assistant helped do the work? (Field type: Comments) Researcher: Which researcher conducted the work? Clare or Vic? (Field type: Categorical) Method: What method was used to catch the fish (Field type: Categorical) Cast_or_Trap_Numer: The cast or trap numer that the fish was caught at (Field type: Numeric) Distance: The distance along the transect in which the fish was caught (Field type: Numeric) Taxon: Species sampled (Field type: Taxa) N: The number of fish caught at that stream, location and date (Field type: Numeric) Pittagnumber: The 10 digit pit tag number (Field type: ID) Recapture: Has this fish been caught before? (Field type: Categorical) Length: Total length of fish (Field type: Numeric) Weight: Weight of fish (Field type: Numeric) Specimen: Was this fish taken as a specimen? (Field type: Categorical) Stable_isotope_Fin: Number of the stable isotope sample of all fin clips if they were taken (Field type: Numeric) Stable_isotope_Muscle: Number of the stable isotope sample of all muscle samples if they were taken (Field type: Numeric) Notes: Notes, includes any data changes, fish deaths etc. (Field type: Comments) EnvironmentalData2017 (described in worksheet EnvironmentalData2017) Description: Averaged data by stream of all measured environmental variables Number of fields: 22 Number of data rows: 23 Fields: Stream: Which stream was sampled (Field type: Location) Landuse: Landuse of the stream sampled (Field type: Categorical) Turbidity: Stream water turbidity (Field type: Numeric) Flow: Average flow of the stream (Field type: Numeric) Wetted_width: wetted width of the stream (Field type: Numeric) Depth: Average stream depth (Field type: Numeric) sand: Stream substrate (Field type: Numeric) gravel: Stream substrate (Field type: Numeric) pebbles: Stream substrate (Field type: Numeric) large_rocks: Stream substrate (Field type: Numeric) bedrock: Stream substrate (Field type: Numeric) Littoral.leaf.litter.cover: leaf litter on stream bed (Field type: Numeric) pH: Stream pH (Field type: Numeric) Temperature: Stream water temperature (Field type: Numeric) O2: Dissolved oxygen (Field type: Numeric) Conductivity: Stream conductivity (Field type: Numeric) Canopy.openness: Canopy openness above the stream, average from upstream, downstream, left and right bank measurements (Field type: Numeric) Sedimentation: Is there sediment within the stream? Yes or No (Field type: Categorical) CanopyOpennessRiparian: Canopy openness in the riparian, average from upstream, downstream, away from the stream and towards the stream measurements (Field type: Numeric) Vine: % vine cover (Field type: Numeric) FQ: Average SAFE project forest quality score (0-1) (Field type: Numeric) Tree: Density of trees (Field type: Numeric) Date range: 2011-09-19 to 2017-07-06 Latitudinal extent: 4.5000 to 5.0700 Longitudinal extent: 116.7500 to 117.8200 Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. Animalia - Chordata - - Actinopterygii - - - Anguilliformes - - - - Anguillidae - - - - - Anguilla - - - - - - Anguilla borneensis - - - - - - Anguilla marmorata - - - Cypriniformes - - - - Balitoridae - - - - - Gastromyzon - - - - - - Gastromyzon ingeri - - - - - - Gastromyzon lepidogaster - - - - - - Gastromyzon umbrus - - - - - Homalopteroides - - - - - - Homalopteroides stephensoni - - - - - Parhomaloptera - - - - - - Parhomaloptera microstoma - - - - - Protomyzon - - - - - - Protomyzon borneensis - - - - - - Protomyzon griswoldi - - - - - - Protomyzon whiteheadi - - - - Cyprinidae - - - - - Anematichthys - - - - - - Anematichthys repasson - - - - - Barbonymus - - - - - - [Barbodes collingwoodi] - - - - - - Barbonymus balleroides - - - - - Crossocheilus - - - - - - [Crosseocheilus elegans] - - - - - Cyclocheilichthys - - - - - Garra - - - - - - Garra borneensis - - - - - Hampala - - - - - - Hampala sabana - - - - - Leptobarbus - - - - - - Leptobarbus melanotaenia - - - - - Lobocheilos - - - - - - Lobocheilos erinaceus - - - - - - Lobocheilos unicornis - - - - - Luciosoma - - - - - - [Luciosoma pelligrinii] - - - - - Nematabramis - - - - - - Nematabramis borneensis - - - - - - Nematabramis everetti - - - - - Osteochilus - - - - - - Osteochilus chini - - - - - - Osteochilus ingeri - - - - - Puntius - - - - - - Puntius sealei - - - - - Rasbora - - - - - - Rasbora elegans - - - - - - Rasbora hubbsi - - - - - - [Rasbora pycnopeza] - - - - - Tor - - - - - - Tor tambra - - - - Nemacheilidae - - - - - Nemacheilus - - - - - - Nemacheilus olivaceus - - - Perciformes - - - - Channidae - - - - - Channa - - - - - - Channa striata - - - - Cichlidae - - - - - Oreochromis - - - - - - Oreochromis mossambicus - - - - Osphronemidae - - - - - Betta - - - - - - Betta unimaculata - - - Siluriformes - - - - Bagridae - - - - - Hemibagrus - - - - - - Hemibagrus baramensis - - - - - - Hemibagrus fortis - - - - Clariidae - - - - - Clarias - - - - - - Clarias anfractus - - - - - - [Clarias teysmanni] - - - Synbranchiformes - - - - Mastacembelidae - - - - - Macrognathus - - - - - - Macrognathus keithi - - - - - Mastacembelus - - - - - - Mastacembelus unicolor Description: All fish catch data of all methods across all streams sampled at the SAFE project, Danum Valley and surrounding oil palm areas. Please note this is the raw dataset and may contain errors that need correcting/editing. I have tried to correct the majority of errors, but all were corrected in seperate files prior to analysis, so please see specific datasets in relation to specific papers already published. All changes are detailed in the notes column or listed here if more general. All Rasbora caught in 2013 are labelled as cf. sumatrana as they were not differentiated from R. hubbsi. All Systomus changed to Barbodes. All Tor labelled as T. tambra, with no differentiation between tambra and tambroides. Project: This dataset was collected as part of the following SAFE research project: Composition and abundance of tropical freshwater vertebrate communities across a land use gradient XML metadata: GEMINI compliant metadata for this dataset is available here Files: This consists of 1 file: ClareW_RawDataFish.xlsx ClareW_RawDataFish.xlsx This file contains dataset metadata and 2 data tables: Fish catch data (described in worksheet Data) Description: Fish catch data Number of fields: 17 Number of data rows: 16022 Fields: Date: Date that stream was sampled (Field type: Date) Stream.: Which stream was sampled (Field type: Location) RA.: Which research assistant helped do the work? (Field type: Comments) Researcher: Which researcher conducted the work? Clare or Vic? (Field type: Categorical) Method: What method was used to catch the fish (Field type: Categorical) Cast_or_Trap_Numer: The cast or trap numer that the fish was caught at (Field type: Numeric) Distance: The distance along the transect in which the fish was caught (Field type: Numeric) Taxon: Species sampled (Field type: Taxa) N: The number of fish caught at that stream, location and date (Field type: Numeric) Pittagnumber: The 10 digit pit tag number (Field type: ID) Recapture: Has this fish been caught before? (Field type: Categorical) Length: Total length of fish (Field type: Numeric) Weight: Weight of fish (Field type: Numeric) Specimen: Was this fish taken as a specimen? (Field type: Categorical) Stable_isotope_Fin: Number of the stable isotope sample of all fin clips if they were taken (Field type: Numeric) Stable_isotope_Muscle: Number of the stable isotope sample of all muscle samples if they were taken (Field type: Numeric) Notes: Notes, includes any data changes, fish deaths etc. (Field type: Comments) EnvironmentalData2017 (described in worksheet EnvironmentalData2017) Description: Averaged data by stream of all measured environmental variables Number of fields: 22 Number of data rows: 23 Fields: Stream: Which stream was sampled (Field type: Location) Landuse: Landuse of the stream sampled (Field type: Categorical) Turbidity: Stream water turbidity (Field type: Numeric) Flow: Average flow of the stream (Field type: Numeric) Wetted_width: wetted width of the stream (Field type: Numeric) Depth: Average stream depth (Field type: Numeric) sand: Stream substrate (Field type: Numeric) gravel: Stream substrate (Field type: Numeric) pebbles: Stream substrate (Field type: Numeric) large_rocks: Stream substrate (Field type: Numeric) bedrock: Stream substrate (Field type: Numeric) Littoral.leaf.litter.cover: leaf litter on stream bed (Field type: Numeric) pH: Stream pH (Field type: Numeric) Temperature: Stream water temperature (Field type: Numeric) O2: Dissolved oxygen (Field type: Numeric) Conductivity: Stream conductivity (Field type: Numeric) Canopy.openness: Canopy openness above the stream, average from upstream, downstream, left and right bank measurements (Field type: Numeric) Sedimentation: Is there sediment within the stream? Yes or No (Field type: Categorical) CanopyOpennessRiparian: Canopy openness in the riparian, average from upstream, downstream, away from the stream and towards the stream measurements (Field type: Numeric) Vine: % vine cover (Field type: Numeric) FQ: Average SAFE project forest quality score (0-1) (Field type: Numeric) Tree: Density of trees (Field type: Numeric) Date range: 2011-09-19 to 2017-07-06 Latitudinal extent: 4.5000 to 5.0700 Longitudinal extent: 116.7500 to 117.8200 Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. Animalia - Chordata - - Actinopterygii - - - Anguilliformes - - - - Anguillidae - - - - - Anguilla - - - - - - Anguilla borneensis - - - - - - Anguilla marmorata - - - Cypriniformes - - - - Balitoridae - - - - - Gastromyzon - - - - - - Gastromyzon ingeri - - - - - - Gastromyzon lepidogaster - - - - - - Gastromyzon umbrus - - - - - Homalopteroides - - - - - - Homalopteroides stephensoni - - - - - Parhomaloptera - - - - - - Parhomaloptera microstoma - - - - - Protomyzon - - - - - - Protomyzon borneensis - - - - - - Protomyzon griswoldi - - - - - - Protomyzon whiteheadi - - - - Cyprinidae - - - - - Anematichthys - - - - - - Anematichthys repasson - - - - - Barbonymus - - - - - - [Barbodes collingwoodi] - - - - - - Barbonymus balleroides - - - - - Crossocheilus - - - - - - [Crosseocheilus elegans] - - - - - Cyclocheilichthys - - - - - Garra - - - - - - Garra borneensis - - - - - Hampala - - - - - - Hampala sabana - - - - - Leptobarbus - - - - - - Leptobarbus melanotaenia - - - - - Lobocheilos - - - - - - Lobocheilos erinaceus - - - - - - Lobocheilos unicornis - - - - - Luciosoma - - - - - - [Luciosoma pelligrinii] - - - - - Nematabramis - - - - - - Nematabramis borneensis - - - - - - Nematabramis everetti - - - - - Osteochilus - - - - - - Osteochilus chini - - - - - - Osteochilus ingeri - - - - - Puntius - - - - - - Puntius sealei - - - - - Rasbora - - - - - - Rasbora elegans - - - - - - Rasbora hubbsi - - - - - - [Rasbora pycnopeza] - - - - - Tor - - - - - - Tor tambra - - - - Nemacheilidae - - - - - Nemacheilus - - - - - - Nemacheilus olivaceus - - - Perciformes - - - - Channidae - - - - - Channa - - - - - - Channa striata - - - - Cichlidae - - - - - Oreochromis - - - - - - Oreochromis mossambicus - - - - Osphronemidae - - - - - Betta - - - - - - Betta unimaculata - - - Siluriformes - - - - Bagridae - - - - - Hemibagrus - - - - - - Hemibagrus baramensis - - - - - - Hemibagrus fortis - - - - Clariidae - - - - - Clarias - - - - - - Clarias anfractus - - - - - - [Clarias teysmanni] - - - Synbranchiformes - - - - Mastacembelidae - - - - - Macrognathus - - - - - - Macrognathus keithi - - - - - Mastacembelus - - - - - - Mastacembelus unicolor