NARWHAL, a primary analysis pipeline for NGS data

Summary: The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open source aligners and automated quality assessment. The entire pipeline can be run using only one simple samp...

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Published in:Bioinformatics
Main Authors: Brouwer, R.W.W., van den Hout, M.C.G.N., Grosveld, F.G., van IJcken, W.F.J.
Format: Text
Language:English
Published: Oxford University Press 2011
Subjects:
APPLICATIONS NOTE
narwhal*
Online Access:http://bioinformatics.oxfordjournals.org/cgi/content/short/btr613v1
https://doi.org/10.1093/bioinformatics/btr613
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spelling fthighwire:oai:open-archive.highwire.org:bioinfo:btr613v1 2023-05-15T17:14:11+02:00 NARWHAL, a primary analysis pipeline for NGS data Brouwer, R.W.W. van den Hout, M.C.G.N. Grosveld, F.G. van IJcken, W.F.J. 2011-11-08 23:02:56.0 text/html http://bioinformatics.oxfordjournals.org/cgi/content/short/btr613v1 https://doi.org/10.1093/bioinformatics/btr613 en eng Oxford University Press http://bioinformatics.oxfordjournals.org/cgi/content/short/btr613v1 http://dx.doi.org/10.1093/bioinformatics/btr613 Copyright (C) 2011, Oxford University Press APPLICATIONS NOTE TEXT 2011 fthighwire https://doi.org/10.1093/bioinformatics/btr613 2015-03-01T01:29:59Z Summary: The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open source aligners and automated quality assessment. The entire pipeline can be run using only one simple sample-sheet for diverse sequencing applications. Narwhal creates a sample oriented data structure and outperforms existing tools in speed. Availability: https://trac.nbic.nl/narwhal/ Supplementary information: Supplementary information is available at https://trac.nbic.nl/narwhal/ Contact: w.vanijcken@erasmusmc.nl Text narwhal* HighWire Press (Stanford University) Bioinformatics 28 2 284 285
institution Open Polar
collection HighWire Press (Stanford University)
op_collection_id fthighwire
language English
topic APPLICATIONS NOTE
spellingShingle APPLICATIONS NOTE
Brouwer, R.W.W.
van den Hout, M.C.G.N.
Grosveld, F.G.
van IJcken, W.F.J.
NARWHAL, a primary analysis pipeline for NGS data
topic_facet APPLICATIONS NOTE
description Summary: The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open source aligners and automated quality assessment. The entire pipeline can be run using only one simple sample-sheet for diverse sequencing applications. Narwhal creates a sample oriented data structure and outperforms existing tools in speed. Availability: https://trac.nbic.nl/narwhal/ Supplementary information: Supplementary information is available at https://trac.nbic.nl/narwhal/ Contact: w.vanijcken@erasmusmc.nl
format Text
author Brouwer, R.W.W.
van den Hout, M.C.G.N.
Grosveld, F.G.
van IJcken, W.F.J.
author_facet Brouwer, R.W.W.
van den Hout, M.C.G.N.
Grosveld, F.G.
van IJcken, W.F.J.
author_sort Brouwer, R.W.W.
title NARWHAL, a primary analysis pipeline for NGS data
title_short NARWHAL, a primary analysis pipeline for NGS data
title_full NARWHAL, a primary analysis pipeline for NGS data
title_fullStr NARWHAL, a primary analysis pipeline for NGS data
title_full_unstemmed NARWHAL, a primary analysis pipeline for NGS data
title_sort narwhal, a primary analysis pipeline for ngs data
publisher Oxford University Press
publishDate 2011
url http://bioinformatics.oxfordjournals.org/cgi/content/short/btr613v1
https://doi.org/10.1093/bioinformatics/btr613
genre narwhal*
genre_facet narwhal*
op_relation http://bioinformatics.oxfordjournals.org/cgi/content/short/btr613v1
http://dx.doi.org/10.1093/bioinformatics/btr613
op_rights Copyright (C) 2011, Oxford University Press
op_doi https://doi.org/10.1093/bioinformatics/btr613
container_title Bioinformatics
container_volume 28
container_issue 2
container_start_page 284
op_container_end_page 285
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