| Summary: | The combined effects of anthropogenic stressors and threats associated with global climate change, including increased coral disease occurrence and frequency, duration of coral bleaching, and impacts from ocean acidification, put coral reef ecosystems at a high risk of collapse. Tissue-loss diseases (white-band disease and rapid tissue loss) have caused dramatic declines in Acropora cervicornis (staghorn coral) populations across the Caribbean and tropical western Atlantic Ocean. As a result, the species is listed as threatened under the United States Endangered Species Act and critically endangered under the International Union for Conservation of Nature's Red List. Bacterial infections have been suggested as causative agents in many coral diseases worldwide, but identifying specific pathogenic microorganisms remains inconclusive. Reef sediment may play a role, as the uncharacteristic upward progression of white-band disease often begins where branches touch sediment. Tissue-loss diseases affecting A. cervicornis were investigated using histopathological examinations and bacterial 16S rDNA next-generation sequencing. The microbiomes of apparently healthy A. cervicornis, diseased A. cervicornis, and adjacent sediment samples were compared. Taxonomic and phylogenetic analyses found Proteobacteria to be the dominant phylum present in all reef-sediment and coral-tissue samples. Sediment-associated microbial communities were significantly more diverse than those associated with coral tissue, and microbial communities associated with apparently healthy A. cervicornis were more diverse than communities associated with diseased coral tissue. This study confirmed the presence of bacteria from families Vibrionaceae and Rickettsiaceae, both of which have been previously associated with coral diseases. Vibrionaceae bacteria were found in both coral and sediment samples while Rickettsiaceae bacteria were limited to coral tissue samples. Linear discriminant analysis revealed that communities associated with the tissue-loss ...
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