geneGIS: Computational Tools for Spatial Analyses of DNA Profiles with Associated Photo-Identification and Telemetry Records of Marine Mammals

We are developing computational tools for improved visual exploration and spatial analysis of DNA profiles, with accompanying photo-identification records or telemetry tracks of marine mammals. Referred to as geneGIS, the computational tools provide the ability to display, browse, select, filter and...

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Bibliographic Details
Main Authors: Baker, C S, Wright, Dawn, Calambokidis, John
Other Authors: OREGON STATE UNIV NEWPORT HATFIELD MARINE SCIENCE CENTER
Format: Text
Language:English
Published: 2012
Subjects:
Biological Oceanography
Computer Programming and Software
*DATA BASES
*WHALES
CETACEA
GENETIC MARKERS
IDENTIFICATION
INFORMATION SYSTEMS
MARINE BIOLOGY
NORTH ATLANTIC OCEAN
NORTH PACIFIC OCEAN
POPULATION
SURVEYS
TRACKING
DNA PROFILES
HUMPBACK WHALES
MARINE MAMMALS
MIGRATORY WHALES
RIGHT WHALES
SPLASH(STRUCTURE OF POPULATIONS LEVELS OF ABUNDANCE AND STATUS OF HUMPBACKS)
Pacific
North Atlantic
North Atlantic right whale
Online Access:http://www.dtic.mil/docs/citations/ADA573307
http://oai.dtic.mil/oai/oai?&verb=getRecord&metadataPrefix=html&identifier=ADA573307
Description
Summary:We are developing computational tools for improved visual exploration and spatial analysis of DNA profiles, with accompanying photo-identification records or telemetry tracks of marine mammals. Referred to as geneGIS, the computational tools provide the ability to display, browse, select, filter and summarize spatio-temporal relationships of these individual-based records and associated data from molecular markers and ecomarkers (e.g., stable isotopes). A toolbox of software applications allows basic summaries of spatially selected data and export of data in standard tabular and database formats (e.g., XLS, CSV, MDB, KML), as well as specialized formats required for programs commonly used in molecular ecology and capture-mark-recapture. The data format complies with OBIS standards and the database architecture is compatible with the Arc Marine data model, providing a link with other datasets and tools needed for an integrated description of the genetic and environmental seascape of cetaceans. We have implemented geneGIS as toolboxes in the desktop version of ArcGIS 10.1 and through programmatic enhancements of the web-based Shepherd Project using DNA profiles and photo-identification records derived from an ocean-wide survey of humpback whales in the North Pacific (SPLASH and geneSPLASH). We have recently been granted access to a subset of photoidentification sighting records and associated DNA profiles from the North Atlantic Right Whale Consortium for implementation in geneGIS. Spatio-temporal analyses of databases from long-lived, migratory whales will be suitable for informing conceptual models of cetacean populations, including the Population Consequences of Acoustic Disturbance (PCAD) and the Testing of Spatial Structure Methods (TOSSM). The original document contains color images.

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