Filtered sequencing data (MOTUs) for fungal metabarcode
This table contains filtered MOTUs for the fungal metabarcode. Amplicons were amplified using ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012). Sequences were obtained by a 2 x 250 bp paired-end sequ...
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ftdryad:oai:v1.datadryad.org:10255/dryad.93607 2023-05-15T14:00:52+02:00 Filtered sequencing data (MOTUs) for fungal metabarcode Pansu, Johan Winkworth, Richard C. Hennion, Françoise Gielly, Ludovic Taberlet, Pierre Choler, Philippe Kerguelen Islands Sub-Antarctic Islands 2015-07-28T13:41:50Z 412558 3213 http://hdl.handle.net/10255/dryad.93607 https://doi.org/10.5061/dryad.t8534/4 unknown doi:10.5061/dryad.t8534 doi:10.5061/dryad.t8534/4 http://hdl.handle.net/10255/dryad.93607 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Environmental DNA Invasive species Metabarcoding Soil communities Dataset untilArticleAppears 2015 ftdryad https://doi.org/10.5061/dryad.t8534/4 https://doi.org/10.5061/dryad.t8534 2020-01-01T15:22:51Z This table contains filtered MOTUs for the fungal metabarcode. Amplicons were amplified using ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012). Sequences were obtained by a 2 x 250 bp paired-end sequencing on Illumina MiSeq platform. Data filtering and MOTUs clustering were performed according to the procedure described in the supplementary materials of Pansu et al. (2015): 'Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago'. Report Antarc* Antarctic Kerguelen Islands Dryad Digital Repository (Duke University) Antarctic Kerguelen Kerguelen Islands |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
Environmental DNA Invasive species Metabarcoding Soil communities |
spellingShingle |
Environmental DNA Invasive species Metabarcoding Soil communities Pansu, Johan Winkworth, Richard C. Hennion, Françoise Gielly, Ludovic Taberlet, Pierre Choler, Philippe Filtered sequencing data (MOTUs) for fungal metabarcode |
topic_facet |
Environmental DNA Invasive species Metabarcoding Soil communities |
description |
This table contains filtered MOTUs for the fungal metabarcode. Amplicons were amplified using ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012). Sequences were obtained by a 2 x 250 bp paired-end sequencing on Illumina MiSeq platform. Data filtering and MOTUs clustering were performed according to the procedure described in the supplementary materials of Pansu et al. (2015): 'Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago'. |
format |
Report |
author |
Pansu, Johan Winkworth, Richard C. Hennion, Françoise Gielly, Ludovic Taberlet, Pierre Choler, Philippe |
author_facet |
Pansu, Johan Winkworth, Richard C. Hennion, Françoise Gielly, Ludovic Taberlet, Pierre Choler, Philippe |
author_sort |
Pansu, Johan |
title |
Filtered sequencing data (MOTUs) for fungal metabarcode |
title_short |
Filtered sequencing data (MOTUs) for fungal metabarcode |
title_full |
Filtered sequencing data (MOTUs) for fungal metabarcode |
title_fullStr |
Filtered sequencing data (MOTUs) for fungal metabarcode |
title_full_unstemmed |
Filtered sequencing data (MOTUs) for fungal metabarcode |
title_sort |
filtered sequencing data (motus) for fungal metabarcode |
publishDate |
2015 |
url |
http://hdl.handle.net/10255/dryad.93607 https://doi.org/10.5061/dryad.t8534/4 |
op_coverage |
Kerguelen Islands Sub-Antarctic Islands |
geographic |
Antarctic Kerguelen Kerguelen Islands |
geographic_facet |
Antarctic Kerguelen Kerguelen Islands |
genre |
Antarc* Antarctic Kerguelen Islands |
genre_facet |
Antarc* Antarctic Kerguelen Islands |
op_relation |
doi:10.5061/dryad.t8534 doi:10.5061/dryad.t8534/4 http://hdl.handle.net/10255/dryad.93607 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.t8534/4 https://doi.org/10.5061/dryad.t8534 |
_version_ |
1766270258580029440 |