R script: 4_RAD_Parse_blast_xml_Pp_Dd

This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO).

Bibliographic Details
Main Authors: Viricel, Amélia, Pante, Eric, Dabin, Willy, Simon-Bouhet, Benoît
Format: Report
Language:unknown
Published: 2013
Subjects:
Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Northeast Atlantic
Online Access:http://hdl.handle.net/10255/dryad.56795
https://doi.org/10.5061/dryad.mk364/5
id ftdryad:oai:v1.datadryad.org:10255/dryad.56795
record_format openpolar
spelling ftdryad:oai:v1.datadryad.org:10255/dryad.56795 2023-05-15T17:41:07+02:00 R script: 4_RAD_Parse_blast_xml_Pp_Dd Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît Northeast Atlantic 2013-11-21T14:29:11Z http://hdl.handle.net/10255/dryad.56795 https://doi.org/10.5061/dryad.mk364/5 unknown doi:10.5061/dryad.mk364 doi:10.5061/dryad.mk364/5 http://hdl.handle.net/10255/dryad.56795 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Phylogenetic Theory and Methods Genomics/Proteomics Mammals Dataset untilArticleAppears 2013 ftdryad https://doi.org/10.5061/dryad.mk364/5 https://doi.org/10.5061/dryad.mk364 2020-01-01T15:05:04Z This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO). Report Northeast Atlantic Dryad Digital Repository (Duke University)
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
spellingShingle Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
R script: 4_RAD_Parse_blast_xml_Pp_Dd
topic_facet Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
description This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO).
format Report
author Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
author_facet Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
author_sort Viricel, Amélia
title R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_short R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_full R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_fullStr R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_full_unstemmed R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_sort r script: 4_rad_parse_blast_xml_pp_dd
publishDate 2013
url http://hdl.handle.net/10255/dryad.56795
https://doi.org/10.5061/dryad.mk364/5
op_coverage Northeast Atlantic
genre Northeast Atlantic
genre_facet Northeast Atlantic
op_relation doi:10.5061/dryad.mk364
doi:10.5061/dryad.mk364/5
http://hdl.handle.net/10255/dryad.56795
op_rights http://creativecommons.org/publicdomain/zero/1.0/
op_rightsnorm CC0
PDM
op_doi https://doi.org/10.5061/dryad.mk364/5
https://doi.org/10.5061/dryad.mk364
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