R script: 4_RAD_Parse_blast_xml_Pp_Dd
This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO).
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2013
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Online Access: | http://hdl.handle.net/10255/dryad.56795 https://doi.org/10.5061/dryad.mk364/5 |
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ftdryad:oai:v1.datadryad.org:10255/dryad.56795 2023-05-15T17:41:07+02:00 R script: 4_RAD_Parse_blast_xml_Pp_Dd Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît Northeast Atlantic 2013-11-21T14:29:11Z http://hdl.handle.net/10255/dryad.56795 https://doi.org/10.5061/dryad.mk364/5 unknown doi:10.5061/dryad.mk364 doi:10.5061/dryad.mk364/5 http://hdl.handle.net/10255/dryad.56795 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Phylogenetic Theory and Methods Genomics/Proteomics Mammals Dataset untilArticleAppears 2013 ftdryad https://doi.org/10.5061/dryad.mk364/5 https://doi.org/10.5061/dryad.mk364 2020-01-01T15:05:04Z This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO). Report Northeast Atlantic Dryad Digital Repository (Duke University) |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
Phylogenetic Theory and Methods Genomics/Proteomics Mammals |
spellingShingle |
Phylogenetic Theory and Methods Genomics/Proteomics Mammals Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît R script: 4_RAD_Parse_blast_xml_Pp_Dd |
topic_facet |
Phylogenetic Theory and Methods Genomics/Proteomics Mammals |
description |
This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO). |
format |
Report |
author |
Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît |
author_facet |
Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît |
author_sort |
Viricel, Amélia |
title |
R script: 4_RAD_Parse_blast_xml_Pp_Dd |
title_short |
R script: 4_RAD_Parse_blast_xml_Pp_Dd |
title_full |
R script: 4_RAD_Parse_blast_xml_Pp_Dd |
title_fullStr |
R script: 4_RAD_Parse_blast_xml_Pp_Dd |
title_full_unstemmed |
R script: 4_RAD_Parse_blast_xml_Pp_Dd |
title_sort |
r script: 4_rad_parse_blast_xml_pp_dd |
publishDate |
2013 |
url |
http://hdl.handle.net/10255/dryad.56795 https://doi.org/10.5061/dryad.mk364/5 |
op_coverage |
Northeast Atlantic |
genre |
Northeast Atlantic |
genre_facet |
Northeast Atlantic |
op_relation |
doi:10.5061/dryad.mk364 doi:10.5061/dryad.mk364/5 http://hdl.handle.net/10255/dryad.56795 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.mk364/5 https://doi.org/10.5061/dryad.mk364 |
_version_ |
1766142374522650624 |