Custom Perl script for extracting SNPs

Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.

Bibliographic Details
Main Authors: Malenfant, René M., Coltman, David W., Richardson, Evan S., Lunn, Nicholas J., Davis, Corey S.
Format: Report
Language:unknown
Published: 2013
Subjects:
Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Canada
Churchill
Wapusk national park
Online Access:http://hdl.handle.net/10255/dryad.53191
https://doi.org/10.5061/dryad.606j6/1
id ftdryad:oai:v1.datadryad.org:10255/dryad.53191
record_format openpolar
spelling ftdryad:oai:v1.datadryad.org:10255/dryad.53191 2023-05-15T15:55:03+02:00 Custom Perl script for extracting SNPs Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. Wapusk National Park Churchill Manitoba Canada Cenozoic 2013-11-12T18:39:23Z http://hdl.handle.net/10255/dryad.53191 https://doi.org/10.5061/dryad.606j6/1 unknown doi:10.5061/dryad.606j6 doi:10.5061/dryad.606j6/1 http://hdl.handle.net/10255/dryad.53191 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics Dataset untilArticleAppears 2013 ftdryad https://doi.org/10.5061/dryad.606j6/1 https://doi.org/10.5061/dryad.606j6 2020-01-01T15:03:25Z Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan. Report Churchill Wapusk national park Dryad Digital Repository (Duke University) Canada
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
spellingShingle Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
Custom Perl script for extracting SNPs
topic_facet Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
description Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.
format Report
author Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_facet Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_sort Malenfant, René M.
title Custom Perl script for extracting SNPs
title_short Custom Perl script for extracting SNPs
title_full Custom Perl script for extracting SNPs
title_fullStr Custom Perl script for extracting SNPs
title_full_unstemmed Custom Perl script for extracting SNPs
title_sort custom perl script for extracting snps
publishDate 2013
url http://hdl.handle.net/10255/dryad.53191
https://doi.org/10.5061/dryad.606j6/1
op_coverage Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
geographic Canada
geographic_facet Canada
genre Churchill
Wapusk national park
genre_facet Churchill
Wapusk national park
op_relation doi:10.5061/dryad.606j6
doi:10.5061/dryad.606j6/1
http://hdl.handle.net/10255/dryad.53191
op_rights http://creativecommons.org/publicdomain/zero/1.0/
op_rightsnorm CC0
PDM
op_doi https://doi.org/10.5061/dryad.606j6/1
https://doi.org/10.5061/dryad.606j6
_version_ 1766390390821224448

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