Custom Perl script for extracting SNPs
Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.
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2013
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Online Access: | http://hdl.handle.net/10255/dryad.53191 https://doi.org/10.5061/dryad.606j6/1 |
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ftdryad:oai:v1.datadryad.org:10255/dryad.53191 2023-05-15T15:55:03+02:00 Custom Perl script for extracting SNPs Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. Wapusk National Park Churchill Manitoba Canada Cenozoic 2013-11-12T18:39:23Z http://hdl.handle.net/10255/dryad.53191 https://doi.org/10.5061/dryad.606j6/1 unknown doi:10.5061/dryad.606j6 doi:10.5061/dryad.606j6/1 http://hdl.handle.net/10255/dryad.53191 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics Dataset untilArticleAppears 2013 ftdryad https://doi.org/10.5061/dryad.606j6/1 https://doi.org/10.5061/dryad.606j6 2020-01-01T15:03:25Z Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan. Report Churchill Wapusk national park Dryad Digital Repository (Duke University) Canada |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics |
spellingShingle |
Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. Custom Perl script for extracting SNPs |
topic_facet |
Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics |
description |
Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan. |
format |
Report |
author |
Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. |
author_facet |
Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. |
author_sort |
Malenfant, René M. |
title |
Custom Perl script for extracting SNPs |
title_short |
Custom Perl script for extracting SNPs |
title_full |
Custom Perl script for extracting SNPs |
title_fullStr |
Custom Perl script for extracting SNPs |
title_full_unstemmed |
Custom Perl script for extracting SNPs |
title_sort |
custom perl script for extracting snps |
publishDate |
2013 |
url |
http://hdl.handle.net/10255/dryad.53191 https://doi.org/10.5061/dryad.606j6/1 |
op_coverage |
Wapusk National Park Churchill Manitoba Canada Cenozoic |
geographic |
Canada |
geographic_facet |
Canada |
genre |
Churchill Wapusk national park |
genre_facet |
Churchill Wapusk national park |
op_relation |
doi:10.5061/dryad.606j6 doi:10.5061/dryad.606j6/1 http://hdl.handle.net/10255/dryad.53191 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.606j6/1 https://doi.org/10.5061/dryad.606j6 |
_version_ |
1766390390821224448 |