Custom Perl script for extracting SNPs
Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.
Main Authors: | , , , , |
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Format: | Report |
Language: | unknown |
Published: |
2013
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Subjects: | |
Online Access: | http://hdl.handle.net/10255/dryad.53191 https://doi.org/10.5061/dryad.606j6/1 |
Summary: | Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan. |
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