Custom Perl script for extracting SNPs

Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.

Bibliographic Details
Main Authors: Malenfant, René M., Coltman, David W., Richardson, Evan S., Lunn, Nicholas J., Davis, Corey S.
Format: Report
Language:unknown
Published: 2013
Subjects:
Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Canada
Churchill
Wapusk national park
Online Access:http://hdl.handle.net/10255/dryad.53191
https://doi.org/10.5061/dryad.606j6/1
Description
Summary:Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "<" and ">") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.

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