VanWyngaardenM_etal_SeascapeGen_RCode

• Main Authors: Van Wyngaarden, Mallory, Snelgrove, Paul V. R., DiBacco, Claudio, Hamilton, Lorraine C., Rodriguez-Ezpeleta, Naiara, Zhan, Luyao, Beiko, Robert, Bradbury, Ian R.
• Format: Dataset
• Language: unknown
• Published: 2018
• Subjects: sea scallop; adaptation; single nucleotide polymorphism; population genomics; outlier loci; RAD-seq; Canada; Northwest Atlantic
• Online Access: http://hdl.handle.net/10255/dryad.167517; https://doi.org/10.5061/dryad.c15v5/5

This R file contains pseudocode for the main analyses used in the publication "Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus" by Van Wyngaarden, M et al. Not all steps are included in the code but examples of the major analyses (outlier selection, PCA, RDA, and multiple linear regressions) are presented. Running this code will not repeat all the analyses used in the publication but will allow readers to see what functions were used.